Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1280 ATGAAAGAGATGATGTACAAGATTGCAGCGATGCAGCCAGTGGACATCGATCCAGCCACAATTCGGAAACCTAAGAGGCGAAATGTAAGAATCAGTGATGATCCACAGAGTGTAGCAGCACGCCACCGGAGAGAAAGGATCAGCGAGAAAATTCGGATTCTCCAAAGACTCGTCCCAGGTGGAACAAAAATGGACACAGCTTCAATGTTAGATGAGGCCATCCGCTATGTCAAGTTCCTAAAGAGACAAATTCGCCAGCTACAATCCAATCATCACCCATTACCCACCGATGTCACGGCCTGCCTATCCACCCCAGATTGGGCAGTTACATCAACCAAACTTCTTGGTTCCACCTCCTCATCATCAATGGAAGCACCCGGCGGAGGCGGATTCAGCTTCAGAGCTCTTTAA 411 48.66 MKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRQLQSNHHPLPTDVTACLSTPDWAVTSTKLLGSTSSSSMEAPGGGGFSFRAL* 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22359046 22359457 + Vvi4g1280 Vvi4g1280 786059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1280 136 MobiDBLite consensus disorder prediction 117 136 - -
Vvi4g1280 136 CDD bHLH_AtIND_like 32 90 - -
Vvi4g1280 136 Pfam Helix-loop-helix DNA-binding domain 41 80 IPR011598 GO:0046983
Vvi4g1280 136 Gene3D - 34 101 IPR036638 GO:0046983
Vvi4g1280 136 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 129 IPR045843 GO:0003700|GO:0006355
Vvi4g1280 136 Coils Coil 70 90 - -
Vvi4g1280 136 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 80 IPR011598 GO:0046983
Vvi4g1280 136 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 95 IPR036638 GO:0046983
Vvi4g1280 136 SMART finulus 37 86 IPR011598 GO:0046983
Vvi4g1280 136 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 129 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14720 PF00010 HLH 4.20E-07 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1280 - - vvi:100242028 265.388