Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1282 ATGGGGCTTATCACGGCCAGTTCCTTGTCGTGTATCCTTAGAAAGTGTGTTCCCCACTCAGCAATCTCACAAGCTAAGCAAACCCATGCCCAAATCCTTGTTCATGGCTTCATCCCCAACATCACACTTCAAACTGATCTCTTGTTGGTCTACTCCAAATGCGGTGTTCTTCAAGATGCTCGCAAGGTTTTTGACAAAATGGTTGAAAGAAATATGCACTCATGGAACATTTTGATCGCTTCATATGCTCATAATTGTTTCTTTTACGATGCTTTGGGTGTTTTTGATAGTTTTTTGAAAATGGGGTTTCGACCGGATCATTTCACATTGCCTCCAGTGTTTAAGGCTTGTGCAGGAATTGGAGATTCTTATCTGGGGAAGATGCTTCACAGTTGGGTGATTAGGATTGGGTTTGAAGAATATGTGGTTGTTGGAAGCTCGGTTTTGGATTTTTATGCGAAATGTGGGGGTTTAGTTGATGCATGGCGGTGCTTTGTTAATATGTCTTGGAGGGATTCGGTTGTTTGGAATTTGATGATTGTGGGGTTGGGAAAGGCTTGTTTTTTCAGGGATGCTTTGGAATGTTTTAGGGACATGCTTAGTGAGGGAGTGAAGATGGATTCAAGGACAGTCCCAAGCATTTTAAGCGTGTGTGGAGGGGAAGGAGACTTGATGAAAGGCAAAGAAATTCATGGGCAAGTGGTTAAGAATCAAATTTTTGGTTGTGAGGTTGCTATTGGAAATTCGTTGATTGATATGTATGCAAAGTGTGGGTGCTTGCATGATTCAGAAAAGGTTTTCACGACAATGAGTGAACTGAATCTGGTGACATGGACCTCTATGATATCTTGCTATGGGGTCCATGGTAAAGGACATGAAGCTTTGGCTCTTTTTAAGAAAATGAAATATTGTGGATTTCAGCCTAACTGTGTTACAATCACTGCAATTTTGGCTAGTTGTAGCCACTCTGGTCTTATAGAACAAGGCCGGAAAATTTTTTACTCAATTAATTTAGACTATGGGTTTGAGCCCAGTGCAGAGCACTATGCTTGTATGGTGGATCTATTAGGTCGTTTTGGATATCTTGAGGAAGCTTTTGAATTGATAAAAAATATGAAGTCAGCAGCAACAGCAAGTGTTTGGGGTGCCCTGCTGGCTGGTTGTTTGATGCACAAGAATATTGAGATTGGAGAAATTGCTGCTCATTGCCTCTTTGAATTGGAACCCAGAAACTCTAGCAACTATATAGCCTTGTGTAGTATGTATGATTCTCTTGGAATATGGGACGGTGTTTCAAGAACCAGGGCAAAAATGAGAGAATTAGGATTGGTTAAGACTCCTGGTTGTAGCTGGATTACTGTTGCTGGAAGAGTCCATAAATTCTATCAAGAGGACCTTTCTCATCCTGAGACTCAGATGATATATGAAACATTGCATGGAATTGTTAACATACTTATGTTGCCCAAAGGTTGGGAATAG 1479 40.97 MGLITASSLSCILRKCVPHSAISQAKQTHAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKVFDKMVERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKNQIFGCEVAIGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALALFKKMKYCGFQPNCVTITAILASCSHSGLIEQGRKIFYSINLDYGFEPSAEHYACMVDLLGRFGYLEEAFELIKNMKSAATASVWGALLAGCLMHKNIEIGEIAAHCLFELEPRNSSNYIALCSMYDSLGIWDGVSRTRAKMRELGLVKTPGCSWITVAGRVHKFYQEDLSHPETQMIYETLHGIVNILMLPKGWE* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22409269 22410748 - Vvi4g1282 Vvi4g1282 786061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1282 492 Gene3D Tetratricopeptide repeat domain 246 482 IPR011990 GO:0005515
Vvi4g1282 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vvi4g1282 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Vvi4g1282 492 Pfam PPR repeat family 274 320 IPR002885 -
Vvi4g1282 492 Gene3D Tetratricopeptide repeat domain 3 124 IPR011990 GO:0005515
Vvi4g1282 492 Gene3D Tetratricopeptide repeat domain 125 231 IPR011990 GO:0005515
Vvi4g1282 492 PANTHER OS11G0213500 PROTEIN 5 484 - -
Vvi4g1282 492 Pfam PPR repeat 48 71 IPR002885 -
Vvi4g1282 492 Pfam PPR repeat 349 374 IPR002885 -
Vvi4g1282 492 Pfam PPR repeat 174 204 IPR002885 -
Vvi4g1282 492 Pfam PPR repeat 74 103 IPR002885 -
Vvi4g1282 492 Pfam E motif 391 452 IPR046848 -
Vvi4g1282 492 PANTHER OS07G0578800 PROTEIN-RELATED 5 484 IPR045215 GO:0003723|GO:0009451
Vvi4g1282 492 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Vvi4g1282 492 TIGRFAM PPR: pentatricopeptide repeat domain 73 106 IPR002885 -
Vvi4g1282 492 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Vvi4g1282 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1282 - - - vvi:100267705 1019.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1282 . . . . . . . . . Cmo20g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g01065 . . . . Bhi10g01667 . . . Hepe08g1246 . . Cla02g00059 . . . . . . Lsi10g00721 . . Cme11g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014206 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 0 1 1 1 23