Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1283 ATGAGGGGTGGAACAGTTCAGATCAATTGGCACGACACAAAGCCAATCCTAACCCTAGATTTTCATCCCCTTTCTGGAACTCTCGCTACCGGCGGTGCTGATTACGACATCAAGCTATGGCTGATAAATTCAGGGGAAGTGCAAAAGGAAGTTCCAACTGTTTCCTACCAAACTAGCCTTTCTTACCATGGTTCTGCAGTAAATATTCTTCGCTTCTCTCCAACTGGAGAACAACTTGCCTCTGGTGCTGATGGAGGTGAGCTGATCATCTGGAAGTTACACTCTACAGATACTGGTCCAAGTTGGAAAGTCCTCAAGACATTGTCATTTCACCGCAAGGATGTCCTGGACCTGCAGTGGTCTACCGATGGTGCATTTCTCATTTCTGGATCTGTTGATAATTCTTGCATAATATGGGATGTTAATAAAGGTTCTGTTCATCAGATTTTGGATGCCCATTTGCATTATGTTCAGGGTGTGGCATGGGATCCACAGTCCAAGTATGTTGCATCTCTTAGTTCAGATAGATCCTGCAGGATTTATGTCAATAAGCCTCAAAATAAAACCAAAGGGATAGAAAAAATGAACTATGTTTGTCAGCATGTCATCACAAAATCAGAACAGCAAATGACAGATGATTCCAAGTCTGTAAAAAGTCATCTATTTCATGATGAGACATTGCCGTCTTTCTTCCGAAGATTAAAGTGGTCACCTGATGGATCATTTTTGCTTGTACCTGCAGGTTCGTACAAATTCTCACCTGCATCAGGACCAGTAAACACTGCTTATGTGTTTTCTAGAAAAGATCTTTCAAGACCTGCTTTACAGCTCCCTGGTTCTAGCAAACCTGTCATAGCTGTCCGCTTCTGTCCTATGGCTTTTCACCTTCAGGGATCAAACTCAGCTGGGTTCTTCAAGCTTCCTTATCGCCTAATATTTGCGGTGGCCAGTCTTAACTCTTTATATATCTACGACACAGAAAGCATTCCACCAATAGCAATCTTGGCTGGTCTTCACTATGCAGCCATTACGGACATTGCATGGTCGCATGATGGCAAATATTTAGCTATATCCTCCCAAGACGGTTACAGTACCCTTGTAGAATTTGAAAATGGTGAACTTGGGTCCCCCTTCCTTTTATCAGAAGTCGAGAGTGTCTCGGGTGATGAGAAGAAGAGCCCTGTCCAGCAGCCCAAGGCCATGGAGGTTGAAGAAACTACACAAGTTGTTACTGTTTCAGTAGATAGCAGAAAAAGAGAAGTAGGAAGGAATGATCTCAAAGAGGCATCGCCAAATGCAACAAGTAGTTCCACTTCTACCCCCAAGCCTGCAAAGAGGAGAATCACCCCGGTGTCAATCGAGCCATCATAA 1371 43.62 MRGGTVQINWHDTKPILTLDFHPLSGTLATGGADYDIKLWLINSGEVQKEVPTVSYQTSLSYHGSAVNILRFSPTGEQLASGADGGELIIWKLHSTDTGPSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDVNKGSVHQILDAHLHYVQGVAWDPQSKYVASLSSDRSCRIYVNKPQNKTKGIEKMNYVCQHVITKSEQQMTDDSKSVKSHLFHDETLPSFFRRLKWSPDGSFLLVPAGSYKFSPASGPVNTAYVFSRKDLSRPALQLPGSSKPVIAVRFCPMAFHLQGSNSAGFFKLPYRLIFAVASLNSLYIYDTESIPPIAILAGLHYAAITDIAWSHDGKYLAISSQDGYSTLVEFENGELGSPFLLSEVESVSGDEKKSPVQQPKAMEVEETTQVVTVSVDSRKREVGRNDLKEASPNATSSSTSTPKPAKRRITPVSIEPS* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22411377 22436792 - Vvi4g1283 Vvi4g1283 786062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1283 456 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Vvi4g1283 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 145 - -
Vvi4g1283 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Vvi4g1283 456 MobiDBLite consensus disorder prediction 428 445 - -
Vvi4g1283 456 SUPERFAMILY WD40 repeat-like 10 364 IPR036322 GO:0005515
Vvi4g1283 456 MobiDBLite consensus disorder prediction 389 456 - -
Vvi4g1283 456 Pfam WD domain, G-beta repeat 11 40 IPR001680 GO:0005515
Vvi4g1283 456 Pfam WD domain, G-beta repeat 339 362 IPR001680 GO:0005515
Vvi4g1283 456 Pfam WD domain, G-beta repeat 57 92 IPR001680 GO:0005515
Vvi4g1283 456 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Vvi4g1283 456 Pfam WD domain, G-beta repeat 148 181 IPR001680 GO:0005515
Vvi4g1283 456 Gene3D - 5 252 IPR015943 GO:0005515
Vvi4g1283 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Vvi4g1283 456 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 436 IPR045145 GO:0006335
Vvi4g1283 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Vvi4g1283 456 MobiDBLite consensus disorder prediction 400 414 - -
Vvi4g1283 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Vvi4g1283 456 SMART WD40_4 53 92 IPR001680 GO:0005515
Vvi4g1283 456 SMART WD40_4 3 41 IPR001680 GO:0005515
Vvi4g1283 456 SMART WD40_4 143 182 IPR001680 GO:0005515
Vvi4g1283 456 SMART WD40_4 328 368 IPR001680 GO:0005515
Vvi4g1283 456 SMART WD40_4 101 140 IPR001680 GO:0005515
Vvi4g1283 456 SMART WD40_4 270 325 IPR001680 GO:0005515
Vvi4g1283 456 Gene3D - 255 415 IPR015943 GO:0005515
Vvi4g1283 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Vvi4g1283 456 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1283 K10751 CHAF1B; chromatin assembly factor 1 subunit B - vvi:100245389 897.501
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1283 . . . . . . . . . . Cma03g01090 . Car03g00981 . Sed10g0499 . Cpe10g00342 Bhi03g01357 Tan03g1314 Cmetu08g0769 . Hepe04g1117 . . Cla01g01520 . . . . . . . . Cone6ag1289 . Lsi01g01145 . . Cme08g01079 . Blo06g00198 . . . . . . . Cmo03g01076 . . . . . . . . . . . . . . . . . . . . . . Csa06g02786 Chy02g01049 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011096 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31