Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1285 ATGTCAGGCACAGCTGGTCAAGTTATACGTTGCAAAGCCGCGGTGGCATGGGAAGCGGGAAAGCCATTGGTGATCGAAGAAGTGGAAGTGGCGCCTCCGCAGGCCATGGAGGTTCGTCTGAAGATTCTCTTCACCTCCCTCTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGACAGACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGGGATTGTGGAGAGCGTGGGTGAAGGTGTGACAGATCTCCAACCTGGAGACCATGTTCTTCCTGTATTCACTGGCGAATGCAAGGACTGCCGGCATTGCAAATCGGAGGAGAGTAACATGTGTGACCTCCTCAGGATAAACACCGACAGGGGCGTGATGCTCAATGATAACAAGTCAAGATTCTCTATTAATGGAAAACCCATTTACCATTTTGTGGGGACTTCCACATTTAGCGAATACACTGTGGTTCATGTTGGTTGCGTCGCTAAGATCAACCCTGCTGCCCCACTCGACAAAGTTTGCGTTCTCAGTTGTGGAATCTCAACAGGTCTCGGTGCTACATTGAATGTTGCAAGACCATGGAAGGGTTCATCAGTCGCCATTTTTGGTTTAGGAGCTGTGGGGCTTGCTGCTGCTGAGGGGGCTAGAATTGCAGGTGCTGCCAGAATCATTGGGATTGATCTAAACCCTAAGAGATTTAATGAAGCAAAGAAATTTGGCGTCACTGAGTTTGTGAACCCAAAGGATCATGACAAGCCTGTTCAAGAGGTGATTGCTGAGATGACCGGTGGGGGAGTGGACAGAAGTGTTGAGTGTACCGGAAATGTCAATGCTATGATATCTGCATTCGAGTGTGTTCATGATGGGTGGGGTGTGGCTGTATTGGTTGGTGTGCCAAACAAAGATGACTCATTCAAAACGCATCCCGTGAATCTATTGAACGAAAGGACTCTGAAGGGCACTTTCTTTGGCAACTACAAACCCCGTTCCGACCTTCCTTCAGTGGTGGAAAAATACATGAACAAGGAGCTTGAAGTGGAGAAATTCATCACACATGAAGTCCCTTTTGCAGAGATCAATAAGGCCTTCGAATACATGCTTCAAGGGGATGGCCTTCATAAGAGTGATGAAATATTATTAGTTTTATACAGCGGTAGTGAATAG 1164 47.51 MSGTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQAMEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKDCRHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGISTGLGATLNVARPWKGSSVAIFGLGAVGLAAAEGARIAGAARIIGIDLNPKRFNEAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPNKDDSFKTHPVNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHEVPFAEINKAFEYMLQGDGLHKSDEILLVLYSGSE* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22463211 22468132 + Vvi4g1285 Vvi4g1285 786064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1285 387 Gene3D - 183 321 - -
Vvi4g1285 387 PANTHER ALCOHOL DEHYDROGENASE 1 4 373 - -
Vvi4g1285 387 Gene3D - 19 370 - -
Vvi4g1285 387 CDD alcohol_DH_plants 9 372 - -
Vvi4g1285 387 Pfam Alcohol dehydrogenase GroES-like domain 37 162 IPR013154 -
Vvi4g1285 387 PANTHER ALCOHOL DEHYDROGENASE 4 373 - -
Vvi4g1285 387 SUPERFAMILY GroES-like 328 372 IPR011032 -
Vvi4g1285 387 Pfam Zinc-binding dehydrogenase 206 333 IPR013149 -
Vvi4g1285 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vvi4g1285 387 SUPERFAMILY GroES-like 4 186 IPR011032 -
Vvi4g1285 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1285 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - vvi:100250633 731.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1285 Vvi18g1210 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89