Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1291 ATGAAAAAAAAAAAAAAAACAATTTGCCATGGAAAAAAAATTCCCAAATTAAAAAAAAAAAAAAAAAGAAATTTCCTCAAGGGAACTTCCATGAAAATATATATATATATATATATATATATATTTAAAAATTCCCAAAAAAAAAAAACAAAACAATTCATCAAGGGAAGTCGGCAACTCTTATTGGGAGAGAACCCGAGTGCTCAAAAGGTGGATCCAAACCATGGCAAAGATTGTGGTGGAGCCATGGGCTCCTCGGCATCAAGTACTTCCAAGGGATCCCGAGATTTATCCAATGGCTCTGAATCGTTTCGAAGGCTAGAGGTGGGTGTACCAAACACCAACTCCTCACAGAAGAAGCTCTCTTGGTTGAGATCCCAAATTGTGGGTGGGGACGCAGAGTTCAGCTCCCCCTTTGGAGTCCGCAGGCTCACCTATGCTGATCATACTGCCTCAGGCCGGTGTCTACGCTACATCGAAAACTACATCAACGATAATGTTCTTCCCTTCTATGGGAACACTCATACCTGCGATAGTTTTGTGGGAAGCCGGACTACAAAAATGGTGCATGAAGCCACCAGGTACATCAGGAAGTGCCTAGGCGGTCGACAAGATGATGCACTCATGTTCTGCGGCTCAGGCACCACTGCAGCCATCAAACGGCTACAAGAGGTAATGGGGATCACTGTTCCATCCGTTCTGAGAGAGAGAGTATTGAAAACTTTTAGGAGCGAGGAAAGATGGGTTGTCTTTGTGGGGCCTTATGAGCACCACTCCAACCTCCTGTCATGGAGGCAAAGCCTAGCAGAAGTGGTGGAGATTGGTTTGGATGATGATGGCCTACTCGACATGGAAGCTCTAAGACTACAACTTGAATCTTATCGCCGCTCCAACCGCCCCTTGCTGGGTTCTTTCTCAGCTTGTAGTAATGTAACCGGAATATTTACAGACACCCGAGCGCTGGCTCAGCTTCTTCACCGATATGGAGGTTTTGTATGCTTTGATTTTGCTGCAAGTGGTCCTTATGTGGAAATTGATATGAGATCGGGCGACATTGATTGCTACGATGCCATTTTTTTAAGTCCACACAAGTTTCTCGGCGGACCTGGGTCCCCGGGTATCCTTCTAATGAGCAAGGCGCTCTACCAACTCGGTTGTTCAGCTCCATCAACTTGTGGGGGTGGGATTGTTGATTTTGTCAATGGCTTTAACGAAAAGGACACATTATATTTGGAGGACATAGAGGGAAGGGAAGATGTTGGAACTCCACCCATCATCCAGAAAACCAGAGCAGCATTGGCTTTCTGGGTAAAGGAATACGTTGGCTACAACGTTATAGAAGAAGAGGAGAACAATTACACTGAAGCAGCACTGGAGAGGCTTCTACCAAATCCAAACATATGGGTTTTAGGAAATACAACCGCAAAGCGTCAAGCCATCCTGTCATTCCTTCCTCTTCATGGACCTTTTGTTGCAAAGCTCCTCAACGACCTGTTTGGCATCCAAGCTCGAGGTGGGTGTGCTTGTGCTGGACCCTACGGTCACAGCTTGCTCAAGGTGGATGAGACCCAATCCCTTGCATTCAGATCCGCCATCCAAAAGGGTTATTCAGGAATCAAACCCGGGTGGACGAGAATTAGCTTCCCCTACTACATGTCAAGCGAGGAGTTCGAGTTCATCCTAGATGCACTGGAATTCATAGCTACTTACGGCCAGCGCTTCCTCCCTCTGTATCACTTCAACTGGAAAACAGGCAGCTGGAGCTTCAGGAAGAAGGCACTCAAAGATACCTCGACTCCAACACTCTCTCTCTTCAAGGCCATGCCAGCATTTAGTTCAATCAGTGATGGATCAAGACTACACACCCATGCTGGCAATAAAGATGAAATAATCAGCAGATACGCATCATATCTGGCGACTGCAAACAAAATCGCCAGTCTCCTTGAGAAGTTCCCTCCCCATCGTAGAATTCCAGAAGACATAGATGTCAACCTCATCACATTCAGAGTGTAG 2013 45.95 MKKKKKTICHGKKIPKLKKKKKRNFLKGTSMKIYIYIYIYIFKNSQKKKTKQFIKGSRQLLLGENPSAQKVDPNHGKDCGGAMGSSASSTSKGSRDLSNGSESFRRLEVGVPNTNSSQKKLSWLRSQIVGGDAEFSSPFGVRRLTYADHTASGRCLRYIENYINDNVLPFYGNTHTCDSFVGSRTTKMVHEATRYIRKCLGGRQDDALMFCGSGTTAAIKRLQEVMGITVPSVLRERVLKTFRSEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGLDDDGLLDMEALRLQLESYRRSNRPLLGSFSACSNVTGIFTDTRALAQLLHRYGGFVCFDFAASGPYVEIDMRSGDIDCYDAIFLSPHKFLGGPGSPGILLMSKALYQLGCSAPSTCGGGIVDFVNGFNEKDTLYLEDIEGREDVGTPPIIQKTRAALAFWVKEYVGYNVIEEEENNYTEAALERLLPNPNIWVLGNTTAKRQAILSFLPLHGPFVAKLLNDLFGIQARGGCACAGPYGHSLLKVDETQSLAFRSAIQKGYSGIKPGWTRISFPYYMSSEEFEFILDALEFIATYGQRFLPLYHFNWKTGSWSFRKKALKDTSTPTLSLFKAMPAFSSISDGSRLHTHAGNKDEIISRYASYLATANKIASLLEKFPPHRRIPEDIDVNLITFRV* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22535020 22554070 + Vvi4g1291 Vvi4g1291 786070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1291 670 PANTHER - 82 484 - -
Vvi4g1291 670 Gene3D - 145 424 IPR015421 GO:0003824
Vvi4g1291 670 PANTHER - 485 670 - -
Vvi4g1291 670 SUPERFAMILY PLP-dependent transferases 138 565 IPR015424 -
Vvi4g1291 670 Gene3D Aspartate Aminotransferase, domain 1 425 571 IPR015422 GO:0003824
Vvi4g1291 670 MobiDBLite consensus disorder prediction 64 109 - -
Vvi4g1291 670 Pfam Aminotransferase class-V 148 557 IPR000192 -
Vvi4g1291 670 MobiDBLite consensus disorder prediction 83 100 - -
Vvi4g1291 670 PANTHER CYSTEINE DESULFURASE 82 484 - -
Vvi4g1291 670 PANTHER CYSTEINE DESULFURASE 485 670 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1291 - - - vvi:100253890 1215.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1291 . . . Bda10g00395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe10g00258 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005411 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 3 40