Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1298 ATGATGCCATCGGGACCATCAACATCAATTGGTGGTTCCCAGTCTGCCTCGGCTGCACTCCTGAGATCGAACTCAGGGATTTTGGCTCAAGGTGGTCCACAGGGAGCATATTCTTCACTTTCTTCAGTTCGGCCACAGTATGACATGAATTTGGTCGGAAATGCACAAAACATCTCCTCTGGCCTCAGTCAATCTCTTGGAAGTGGGGGTTCGAACTCTGGCCTCTCTCATTCAGGGAGTTTTCAACATGGAGGCCTTGATACAGGACCTGAGTTTGATGCGCTTTCTATTGCAGCAAATGACATTGCTTTCGCTCCACCAGCTGCATCATTTCCACAACTGAACAGTGGGAATCCTGGTTCATCCAGCCAAGTTCAAAACCAGCATCCTCTAAACTCTTCTGGGAATCAGGTATTGCCAGATCAACTGCAATCTCAACTCCAACAGCTTGAGCGGCAGAAATTTCACCACGGACAGCAGTTGCTGCAGCAATTCAGCCAACAGCAGCTACATCAATTGCACCCTCAACAGCAGCCATATCAAGCAACTCAAGGTGGGTCGGGGGGTGTGGGTGTGAATGATCAAAATTGCCCACAGCAACAGTTGCAATTATCACAACAGAACCAGGTTGGCAGAGGTATTCCGCCTGTCAAAATTCAACCTAATCGTTTAGACCAACAAATGTTTTTGCAGCAGCAACAGCAACGTCAACAATTTCTTCACATGTCGAGGCAGTCTTCTCACGCTACTGCTGCTCAGTTGAATCTTTTGCAACAGCAGCGTTTGTTGCAGCTGCAACAACAAAAGCAGCAACAACAATTGTTGAAGGCAACTCAGCAGCAACCCCAATTGCAGCCCCAGTTTCAACAGCCAAATCTGCCTGCAAAACTGGTCTATGAACCTGGAATGTGTGCTCAGCGTTTAACTCAGTACATGATTCAGCAGAAGCATAGGCCTGATGGCAACAATATTGAATTCTGGCAGAAATTTGTTGCTGAATTTTTTGCTCCCAATGCAAAGAAAAGATGGTGTATATCACAATATGGAAATAACCGACAAACAAATAGCCCTTTTCCTCAGGATGTCTGGCACTGTGAAATATGCAATCGCAGGCCTGGTCGTGGTTTTGAAACAACTTTTGAAGTTCTCCCCAGGCTATGCAAAATCAAGTATGACAGTGGCACTTTGGAAGAGCTTCTATATTTTGATATGCCCCATGAATATCAGGATGCAGCCGGTCAGATTGTACTAGACTTTGCTAAAGCAGTACAAGAAAGTGTCTTTGAGCAACTACGTGTAGTTCGTGATGGGCAACTTCGTATTGTTTTCTCCCCAGATCTAAAGATCTGCTCTTGGCTGTTTTGTGCTCGGCATCATGAGGAACTTATCCCTCGAAGATCAATCATACCTCAGGTTAGTCAGCTTGGAGTTGTGGCGCAAAAATACCATGCTGCTGCTCAAAATCCATCAAACATTTCAATGCAAGAATTAAAAAATAACTGTAATACGTTTGTCTCATCAGCTCGTCAATTAGCAAAAGCATTGGAAGTGCCATTAGTTAATGATTTAGGATATACAAAGAGATTTGTGCGGTGCCTTCAGATATCAGAGGTTGTGAACTGTATGAAAGATTTGATTGACTATAGCCGAGAAACCGAGAAAGGACCTATAGAATGTTTGGCCGAGTTTCCTCGTAGAAGCAGCCGATCATCTGGGATGCATAACCAATTGGAGGAGGAGCAACACCTTCAGCAGCAAAATACAAGGCAGAGGATGAATAATGATGATTATGCTTTAAGGGGATCAGCCACTCAGGTTTCTGCCTGTAATGGTGTTCCAAGTGTCAGTAATGGCCACAGCATAACATCTACTTCAACATCTGCCACCGCAATTGTTGGGCTTCTCTGCCAGAATTCCATGAACTCCAGGCATGAAAACCAGATGAATAATCCTAATAGTCCCTTTTCCGCAACTCCAGGTCAGATCCCATCTGCTGGGTCCTCAACTACACCACCATCAACACAACTCAACCCCTCCTCTCCTTTCTCGTGTCTGACACCATCCTCATCTCACAATCCCACTCCACTTTCTCAGACTGTCTTAACAGCAGAAGCCACTGCAAACCACATCACTTCAGAAAATTCACCTACAAATATCCTTTTCCAAAAATCCTCTGAGTCAAACGAGGCAGATCCAAATGAACACCTGAGCTCTGTTGAGAGAATAATACAAGAAATTATGAGTTCATCACAGTTTAACAGTGCAGGTAGCATGATCAGTGTAGGTTCCGTTGGAAACAATGTGAAAAATGGTAGTGGGATGACACAAATAAACCACAGTTCTATTGGTGGTGGTGACAGCACAATGGGAAGCAGGATAAATAGCAATTCAAGTGTTGGGGCTGCAGGATTTGGAAACTTTGATGGTGGAATTGGTGTCTCTGCCACAGTTAATAGAATCAGAGCAACCATGGGGAATAACTCTATGACCTCAAGTGTTGAGGTAGGCATGCCATCGATGCCTCAGGATGTTACTATGAACAATAAGCAACAGGATATGAAATCTCTCAATGGGGTTGGAGGAGGATTAAATGATTTCAATAATCTCCGGTTCAACTAG 2619 44.37 MMPSGPSTSIGGSQSASAALLRSNSGILAQGGPQGAYSSLSSVRPQYDMNLVGNAQNISSGLSQSLGSGGSNSGLSHSGSFQHGGLDTGPEFDALSIAANDIAFAPPAASFPQLNSGNPGSSSQVQNQHPLNSSGNQVLPDQLQSQLQQLERQKFHHGQQLLQQFSQQQLHQLHPQQQPYQATQGGSGGVGVNDQNCPQQQLQLSQQNQVGRGIPPVKIQPNRLDQQMFLQQQQQRQQFLHMSRQSSHATAAQLNLLQQQRLLQLQQQKQQQQLLKATQQQPQLQPQFQQPNLPAKLVYEPGMCAQRLTQYMIQQKHRPDGNNIEFWQKFVAEFFAPNAKKRWCISQYGNNRQTNSPFPQDVWHCEICNRRPGRGFETTFEVLPRLCKIKYDSGTLEELLYFDMPHEYQDAAGQIVLDFAKAVQESVFEQLRVVRDGQLRIVFSPDLKICSWLFCARHHEELIPRRSIIPQVSQLGVVAQKYHAAAQNPSNISMQELKNNCNTFVSSARQLAKALEVPLVNDLGYTKRFVRCLQISEVVNCMKDLIDYSRETEKGPIECLAEFPRRSSRSSGMHNQLEEEQHLQQQNTRQRMNNDDYALRGSATQVSACNGVPSVSNGHSITSTSTSATAIVGLLCQNSMNSRHENQMNNPNSPFSATPGQIPSAGSSTTPPSTQLNPSSPFSCLTPSSSHNPTPLSQTVLTAEATANHITSENSPTNILFQKSSESNEADPNEHLSSVERIIQEIMSSSQFNSAGSMISVGSVGNNVKNGSGMTQINHSSIGGGDSTMGSRINSNSSVGAAGFGNFDGGIGVSATVNRIRATMGNNSMTSSVEVGMPSMPQDVTMNNKQQDMKSLNGVGGGLNDFNNLRFN* 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22756098 22766447 + Vvi4g1298 Vvi4g1298 786077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1298 872 MobiDBLite consensus disorder prediction 63 87 - -
Vvi4g1298 872 MobiDBLite consensus disorder prediction 565 591 - -
Vvi4g1298 872 MobiDBLite consensus disorder prediction 110 138 - -
Vvi4g1298 872 MobiDBLite consensus disorder prediction 63 83 - -
Vvi4g1298 872 PANTHER TRANSCRIPTIONAL COREPRESSOR SEUSS-LIKE ISOFORM X1 1 872 - -
Vvi4g1298 872 MobiDBLite consensus disorder prediction 111 138 - -
Vvi4g1298 872 Pfam LIM-domain binding protein 307 560 IPR029005 -
Vvi4g1298 872 MobiDBLite consensus disorder prediction 642 696 - -
Vvi4g1298 872 MobiDBLite consensus disorder prediction 169 196 - -
Vvi4g1298 872 MobiDBLite consensus disorder prediction 577 591 - -
Vvi4g1298 872 PANTHER LIM DOMAIN-BINDING PROTEIN 1 872 IPR029005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1298 Vvi18g1200 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1298 - - vvi:100266085 1499.95