Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1299 ATGGGCGTCCGGTGGAATGGCTTGGGAACTTTGATTTGCTTGTGTTTTGCAGTTGAATTGCCCTGGCTGTGGATCACAGTGGTTGTGAGTGCAAATGCTAGAGTATGGCTAGGGGGAGTGTCACACTGTTGTGTTACTGGAATGGGAAGAAGACAAAAGGAGAACATGGCATTGCTTACGAAGGCGCTGCTCCAAGGCCCATCAGGACAGAGGTTGGCCAGATTTATGCGGGAGTGGCCTCTAGATCATCGTGTGCGTCCATACATCATCCAAGCTGGATTCTATGGGGTATACAGAGTTGGATTTATACAGTTGGACTGGACATTAATTACAGCTTTAGTAGAGAGATGGCGACAGGAGACCCACACCTTCCATCTTGCTGTGGGTGAGAGCACTATCACTCTACAAGACACAGCAGTATTATTGGGCCTTCGAGTACATGGTGATCCAGTTACCGGCACCACTGATGTACAGTGGCCTAACCTGTGCGAGGAGTTGTTGGGGAGGAGACCTGATGGCAATTCTCTTCAGGGGTCAGCTCTCAAACTTAGTTGGTTACGGATGCATTTCTTGCAGCCACCTTCAGATGCAGACGATCTTATAGTGCAACAGTATGCCAGGGCGTATATCTTGGCATTGATAGGTGGTGCCCTCTTTGCAGATAAGTCAGGATCAGATGTCCAGTTAATATTTTTGCCCTTACTTAGGGATTTTGTGGCTGCGGGACGACTGAGTTGGGGTAGTGCCACGTTGGCCCACTTATATCGAGAGCTCTGTCGAGCCAGTAAGGCAGGGGCATCAGAAATTGCTGGCCCTCTTATACTTCTACAGCTATGGGCATGGGAGCGATTGCATGTTGGTCGGCCTGAAAAACGAGTTTCCCGGAGTCAACATATGGTTATACCAAGGGGGGAGTGTGTAGGGGCAGAACCACCATTTTTGGATGTTGCAGATGGGGCAGTCATCAATGATCAAACATTACCTGTGGATCCATTAGGATGCATGTGGCGGGTTCCTTTGTCTCGCATCCAGAATCCCCATGGTGTATCAAATACGGGCTTTCAGCCTACAGCAGTGACCACACACTTACTTGTTCAGAGCTTGACTAATATTCATAAACAGTGTGGCATGACGGTCAGTGCTTTCAACAGTGATGATGCACATAGTGCATTGATAAATATCCAAACCATTTGTAGTGATGTCTTGCGCTTGATTGGTGAAGGTCGCCAGCTTGAGGTAGCACACAAACTTGCACCTCCACCTCCAAGTGTGGCCAGAGAACCTGTTAGACAGCAATGTCGAGGTAGAGCTCGTGGTGGAAGGCATGGCATAATACACCCTGCAGCAGTTTCATCCTTAGTTTCACCAGCCACACTTGCGATATCACTACCTGATGCTTCTGTAAAAGCAAGAGATGATAAGCCATTTTTAGCACCATCTCTGGCAGCAATGTCAGCATCAGCAGCCTCACCAAAACCACAAACTCCATCAGATCCTGACTCCATTGAGGGCCCATCACGGGTTGCTCAGGAGGTTGCTTCTTCTATTCTCTCTACAACAATTACGGTTTCTTCAATTAGAAAGCGAAGTCGAGGTAGAGGTAGTAGCAAAGGTCATTTGTGTGGTCCAACAGAAAATGTAGGAATACCCATAGTAATTCCAGTAGACAGGTCATCGTCACAACCACCGCCATCCCCAAGAGTAGCATCAAAAGCAACGGTAAGACTAGAGGGGCTAGCTCAGGTCACCCAGGGGGCTGCTTCAACACCTCTTGCTGAATTAGCATCGCTAGCTACTCCATTAGACACAGCACCATCACCCTCTATGGTATTATCAGAAGCAATGACATCATCAACTACAGTAGACATCAACCCTATTGAGGGGCTATCTGAAGTCATTGACAAGAGTGCAGCTACACCTCCCCCTACCTCAGCATCACCTTCAGATGATTTCATTGAGGGCATGTCTCGGTCTACTCAGGTGGCTGCATTAGCACCTCCCCCTACTGCAGCAACACCTTTGGTCATTTCAGCAAACGTGGCTCCGCTGTCACCATCAGCAGTAGCATCAGAAGCAGTGGTATCATCAATAGCCCCACCTCCATCAGTTATCAGTTCCATTGAGGGGCCATCCCAAGTCACTAAGAATGCTGCATCAGCACCTTCCCCTATCAGAGTTACAGCTCCACCAAGTGAAGGACAAGGCAGAGGCAAAGTAGTCCGGGTTGATCTAACCAAGACCATGCCAACATCCTCTGCAATGCCATCAGATCCACCAGCTTCACTCCTGAATATAATAAGTAAGAGAGCAAAACACCTTTGA 2322 48.36 MGVRWNGLGTLICLCFAVELPWLWITVVVSANARVWLGGVSHCCVTGMGRRQKENMALLTKALLQGPSGQRLARFMREWPLDHRVRPYIIQAGFYGVYRVGFIQLDWTLITALVERWRQETHTFHLAVGESTITLQDTAVLLGLRVHGDPVTGTTDVQWPNLCEELLGRRPDGNSLQGSALKLSWLRMHFLQPPSDADDLIVQQYARAYILALIGGALFADKSGSDVQLIFLPLLRDFVAAGRLSWGSATLAHLYRELCRASKAGASEIAGPLILLQLWAWERLHVGRPEKRVSRSQHMVIPRGECVGAEPPFLDVADGAVINDQTLPVDPLGCMWRVPLSRIQNPHGVSNTGFQPTAVTTHLLVQSLTNIHKQCGMTVSAFNSDDAHSALINIQTICSDVLRLIGEGRQLEVAHKLAPPPPSVAREPVRQQCRGRARGGRHGIIHPAAVSSLVSPATLAISLPDASVKARDDKPFLAPSLAAMSASAASPKPQTPSDPDSIEGPSRVAQEVASSILSTTITVSSIRKRSRGRGSSKGHLCGPTENVGIPIVIPVDRSSSQPPPSPRVASKATVRLEGLAQVTQGAASTPLAELASLATPLDTAPSPSMVLSEAMTSSTTVDINPIEGLSEVIDKSAATPPPTSASPSDDFIEGMSRSTQVAALAPPPTAATPLVISANVAPLSPSAVASEAVVSSIAPPPSVISSIEGPSQVTKNAASAPSPIRVTAPPSEGQGRGKVVRVDLTKTMPTSSAMPSDPPASLLNIISKRAKHL* 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22767812 22772249 - Vvi4g1299 Vvi4g1299 786078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1299 773 MobiDBLite consensus disorder prediction 487 501 - -
Vvi4g1299 773 PANTHER PROTEIN MAIN-LIKE 2 81 291 IPR044824 GO:0010073|GO:0048507
Vvi4g1299 773 MobiDBLite consensus disorder prediction 485 510 - -
Vvi4g1299 773 MobiDBLite consensus disorder prediction 524 546 - -
Vvi4g1299 773 MobiDBLite consensus disorder prediction 708 738 - -
Vvi4g1299 773 Pfam Plant mobile domain 93 299 IPR019557 -
Vvi4g1299 773 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 LONG FORM HOMOLOG ISOFORM X1 81 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1299 - - - vvi:104879179 707.212
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014635 0 0 0 0 0 1 0 1 1 0 1 1 0 1 1 0 1 0 0 1 1 0 1 2 2 1 0 1 1 1 19