Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g130 ATGGGCTTCGATTCTCCACTCTTCTCTGCCCTCCAACACATGCTAGACGCCACCGATGACTCCGACAAGTCCGTCAGCGCCCCCACTCGCACCTACGTCCGCGACGCCAAGGAAGAGAAGGAAGGCGTCAAGTACGTGAGAATGGAGAGGAGGGTAGGCAAATTTATGAGGAAGTTTGCGTTGCCGGAGAATGCGAATACTGATAAGATCTCCGCGGTTTGTCAAGATGGAGTACTGACCGTCACCGTTGAGAAGGTACCACCGCCGGAGCCCAAGAAGCCCAAGACGATTGAGGTCAAGATCGCTTAA 309 54.37 MGFDSPLFSALQHMLDATDDSDKSVSAPTRTYVRDAKEEKEGVKYVRMERRVGKFMRKFALPENANTDKISAVCQDGVLTVTVEKVPPPEPKKPKTIEVKIA* 103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1237844 1238388 - Vvi4g130 Vvi4g130 784909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g130 102 CDD ACD_sHsps-like 37 82 - -
Vvi4g130 102 SUPERFAMILY HSP20-like chaperones 34 94 IPR008978 -
Vvi4g130 102 Gene3D - 7 101 IPR008978 -
Vvi4g130 102 Pfam Hsp20/alpha crystallin family 36 100 IPR002068 -
Vvi4g130 102 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 1 102 IPR002068 -
Vvi4g130 102 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 4 37 - -
Vvi4g130 102 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 38 102 - -
Vvi4g130 102 PANTHER 17.6 KDA CLASS II HEAT SHOCK PROTEIN-RELATED 38 102 - -
Vvi4g130 102 PANTHER 17.6 KDA CLASS II HEAT SHOCK PROTEIN-RELATED 4 37 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g130 K13993 HSP20; HSP20 family protein - vvi:100249153 155.606
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g130 . . . . . . . . . . Cma01g01714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1780 . . . . . . . . Bhi09g03104 Tan01g4592 Cmetu07g0720 . Hepe01g1905 Mch11g0438 . . . . . . . . . . . Cme07g00197
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74