Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1301 ATGCCTGCTTGGTGGGGGAGAAAGTCGAGCAAGTGCAAAGAAGAAAATGGCAAGGACAAGCCCAAGAGCTTCGATGAGGGGCTGTTTTCGCGAAATTCGCCCAGGAGCAGCAAGGACTATGGGGCGTTGACGGTCAGCGGTGGTGGTGGGTCGTCGGGGTTTTCCGGGTTCGATTCGGATTGTGGAGACAAGATCAGGGGACACCCACTGCCTCTGCCGTCGGCGGGAATTGAACATGGGGTGGGATCTGGGTCGGGGTCGGTTTCGAGTGTTAGCTCTTCTGGGTCGTCCGATGATCATCCCAGCCCTCATGATCACGCTCCCTTTGGCGTATATAGAGGACAGGGGGAAACCAAGTCCAACACAAGATCAAGAAGTCCAGGTCCAGGGTCACGATCTGCTACATCACCGCTTCATCCTCGGTTTAGTACCTCGAATATAGATTCTCTGACGGGAAAGCAGGAAGAAGGGAGGAGCTGTCATCGGTTGCCCCTTCCGCCGGGTTCTCCTACCAGCCCTTCTACCTTGTCCAGCACTAGGACTTGCGTAGTGACTGAAAGCACAACTTGTAATATGTCAAAGTGGAAGAAAGGGAGGCTTCTAGGAAGGGGGACTTTTGGGCATGTTTACGTTGGATTTAACAGTGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAGGAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATGGGTGAAGAAACACTATCAGTTTATTTGGAGTATGTCTCTGGTGGCTCTATCCACAAGTTACTTCAAGAATATGGTCCCTTTAAGGAACCTGTCATTCAAAATTATGCTAGGCAGATTATTTCTGGGCTTGCCTACTTACACGGGAGAAGTACTGTGCACAGGGATATCAAAGGGGCAAACATATTAGTGGGACCTAATGGGGAGATCAAGTTGGCTGATTTTGGCATGGCAAAACATATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGGTTGTAATGAATACAAATGGCTACAGCCTTGCGGTGGATATTTGGAGCTTAGGATGTACAATTCTTGAAATGGCAACATCAAAACCACCTTGGAGTCAATATGAAGGGGTGGCTGCAATTTTTAAAATTGGAAACAGCAGGGATGTCCCTGAAATTCCCGATCACCTTTCTAATGATGCAAAAAGTTTTGTAAGGCTATGCTTGCAACGGGATCCATCGGCACGGCCAACAGCCTTACAACTACTAGATCACTCTTTTGTTCGAGACCAAGCCACAACAAGAATTGCTAATATTGCTATAACAAAGGATGCCTTTCCTTCCACCTTTGATGGAAGCCGCACACCGACTGCATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGAGATTATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCCACTACGGAACTATGGACCAGCACACAAGAGCTGCTTTCTTTCTCCTCCTCATCCATCTTATCCTATAGTGGGACAAAGCAGTTACAACTCAAACGATTACTCACTATATCCAACAAGAGCAATCACAAAATATACACATGACCCTTGGTCTGACAACCCCCCATTCAGATCCCTAACACCTAATGGATCCCCAAGAACGAGACCCATTTGA 1803 46.48 MPAWWGRKSSKCKEENGKDKPKSFDEGLFSRNSPRSSKDYGALTVSGGGGSSGFSGFDSDCGDKIRGHPLPLPSAGIEHGVGSGSGSVSSVSSSGSSDDHPSPHDHAPFGVYRGQGETKSNTRSRSPGPGSRSATSPLHPRFSTSNIDSLTGKQEEGRSCHRLPLPPGSPTSPSTLSSTRTCVVTESTTCNMSKWKKGRLLGRGTFGHVYVGFNSENGQMCAIKEVKVVSDDHTSKECLKQLNQEINLLSQLSHPNIVQYYGSEMGEETLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYARQIISGLAYLHGRSTVHRDIKGANILVGPNGEIKLADFGMAKHINSSSSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSRDVPEIPDHLSNDAKSFVRLCLQRDPSARPTALQLLDHSFVRDQATTRIANIAITKDAFPSTFDGSRTPTALELHSNRTSLTLFDGDYVTKPVGTVSRAAKNSRDSVRTITSLPVSPCSSPLRNYGPAHKSCFLSPPHPSYPIVGQSSYNSNDYSLYPTRAITKYTHDPWSDNPPFRSLTPNGSPRTRPI* 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22814275 22820209 + Vvi4g1301 Vvi4g1301 786080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1301 600 MobiDBLite consensus disorder prediction 1 180 - -
Vvi4g1301 600 SMART serkin_6 195 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1301 600 SUPERFAMILY Protein kinase-like (PK-like) 192 452 IPR011009 -
Vvi4g1301 600 MobiDBLite consensus disorder prediction 583 600 - -
Vvi4g1301 600 MobiDBLite consensus disorder prediction 8 26 - -
Vvi4g1301 600 ProSitePatterns Protein kinases ATP-binding region signature. 201 224 IPR017441 GO:0005524
Vvi4g1301 600 MobiDBLite consensus disorder prediction 83 98 - -
Vvi4g1301 600 ProSiteProfiles Protein kinase domain profile. 195 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1301 600 MobiDBLite consensus disorder prediction 115 153 - -
Vvi4g1301 600 Gene3D Transferase(Phosphotransferase) domain 1 191 478 - -
Vvi4g1301 600 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 1 577 - -
Vvi4g1301 600 MobiDBLite consensus disorder prediction 577 600 - -
Vvi4g1301 600 Pfam Protein kinase domain 196 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1301 600 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 577 - -
Vvi4g1301 600 CDD STKc_MEKK1_plant 194 451 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76601 PF00069 Pkinase 2.10E-72 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1301 K04421 - vvi:100243772 1137.48