Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1302 ATGATTTCAGGCTATCATTCCCAATCTTCCCCTGCAATTTTCCCACCTATTTCCCCTTATAAATTTTTCCCTCCCTCCCACCCAACCATTCTTTCCAATTTTCTCTGCTCTTCGATGCCCAGAGGCCTACCATTCTCAGTGGACACATGGACTCCATCTTCAAAGAAAAAGAGGCACCATTTTCTCACTCATGCCCACAAAGACCACTCCTCTGGCATCTCCACCCACTCTGCATATCCAATTTACTCTACCCACCTCACCAAAACCCTAATTCTTCAACAATATCCCCAGCTTGATGATTCATTGTTTGTGGGTATCGAGGTGGGACAGTCGATGGTTGTTGACGACCCGGATGGCAGATTTGGGGTCACGGCTTTTGATGCCAATCACTGCCCTGGAGCTGTAATGTTCTTGTTTGAAGGCGATTTCGGTAACATCCTGCACACAGGAGATTGCAGACTCATCCCTGAGTGTTTGCAAAACTTACCACAGAAGTATGTAACCAAGAAAGGAAAAGAGCCAAAGTGTCAGTTTGATTATGTTTTCCTAGACTGCACGTTTGGGAGATCTTCTCTGCATATCCCCAGCAAGCATTTGGCTATCCAACAGGTTATCAATTGTATATGGAAGCACCCTGATGCCCCTATCGTGTATCTGTGCAGCGATATGCTAGGTCAGGAAGAGATTCTTATCAATGTGTCCAGAATATTTGGGTCCAAGATATTTGTTGATAAAGCCAACAATCCTGAATGTTTCCAAGCTTTGACACATATGGTTCCTGAAATTCTCTCTCAAGATCCATCTTCCCGCTTCCAAGTATTTGAAGGATTTCCTAAGCTTTGTGAAAGAGCACAAGCAAAGCTTGCAGAGGCTCAAGCTAATTCCCTACCTGAGCCTCTCATTATCCGCCCTTCAGCACAATGGTATGCATGTGAGGAAGACTTACCAAAGACTGAAAGGCGAAAAAAGGAGAGCTTTAATGAAGCTGTAAGAGACCAGTTTGGCATTTGGCATGTCTGTTACTCAATTCATTCATCTAGGCAAGAATTAGAGTGGGCTCTGCAGCTTCTTGCACCCAAACGGGTTGTATCAACTACTCCCAGTTGCCGAGCTATGGAGCTGAATTATGTGAAAAAACATTGCTTTAGCAGTCACATAACTTCCAGTGACCCTCTCTGGAAACTTCTAGACATTGGTGTGGAAGCTTGTTCAAATCTGGATGCATCGGTTAAAGTTGTAGGTTGTTCACCTATGATGGAAGGTTCCAGCAAAACTTCTAGATTTGGTTTCCAAGATTCTACTTTTCAGCATGAACAGGAGAAAACAATGGTCATGAAATCTGATCCTCAACAAATAAAAAAAATAGAGGTAGATGTTACTGAAGTACCAAGTGAAAAGTTAGTGGAGAAAGAAACTGAAGTTTGCAAGATTGCTTCTCAGGCCCCCATCATATTGTCAAGGGGCTTTAATGAAAGCTTGAGAAATTTGTACAGGTCAATGAATGTGTCTGTGCCTCAGCCTCTTCCCTCACTGGTGGAACTTATGAATTCCAATAAACGTGCCAAGAAGATGCAACATGGGTGGGATATAAAAATCCTATTTTCTGGTTTGATTAACAGTTGGGATAGGATAACTGGACTGGCCAGGTTATTTTTTGTCCCCTCCACGTGGGATTGA 1677 43.17 MISGYHSQSSPAIFPPISPYKFFPPSHPTILSNFLCSSMPRGLPFSVDTWTPSSKKKRHHFLTHAHKDHSSGISTHSAYPIYSTHLTKTLILQQYPQLDDSLFVGIEVGQSMVVDDPDGRFGVTAFDANHCPGAVMFLFEGDFGNILHTGDCRLIPECLQNLPQKYVTKKGKEPKCQFDYVFLDCTFGRSSLHIPSKHLAIQQVINCIWKHPDAPIVYLCSDMLGQEEILINVSRIFGSKIFVDKANNPECFQALTHMVPEILSQDPSSRFQVFEGFPKLCERAQAKLAEAQANSLPEPLIIRPSAQWYACEEDLPKTERRKKESFNEAVRDQFGIWHVCYSIHSSRQELEWALQLLAPKRVVSTTPSCRAMELNYVKKHCFSSHITSSDPLWKLLDIGVEACSNLDASVKVVGCSPMMEGSSKTSRFGFQDSTFQHEQEKTMVMKSDPQQIKKIEVDVTEVPSEKLVEKETEVCKIASQAPIILSRGFNESLRNLYRSMNVSVPQPLPSLVELMNSNKRAKKMQHGWDIKILFSGLINSWDRITGLARLFFVPSTWD* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22820967 22829378 + Vvi4g1302 Vvi4g1302 786081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1302 558 PANTHER DNA REPAIR METALLO-BETA-LACTAMASE FAMILY PROTEIN 38 417 - -
Vvi4g1302 558 PANTHER DNA REPAIR METALLO-BETA-LACTAMASE FAMILY PROTEIN 446 523 - -
Vvi4g1302 558 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 446 523 - -
Vvi4g1302 558 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 38 417 - -
Vvi4g1302 558 Gene3D - 44 365 IPR036866 -
Vvi4g1302 558 Pfam DNA repair metallo-beta-lactamase 261 369 IPR011084 -
Vvi4g1302 558 Gene3D - 193 344 - -
Vvi4g1302 558 SUPERFAMILY Metallo-hydrolase/oxidoreductase 43 373 IPR036866 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1302 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - vvi:100254013 965.681
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1302 . . . . Bpe15g00412 . . . Cmo02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01045 . . Bma03g01020 . . . . . . . . Cpe05g01059 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009621 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 33