Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g1306 | ATGTCTTTAATCAGACCTGCAGATTCATCTGCTCCTTCATATGGGGAGTCAAGAATTTACCAGGCCAAAGGAAGCAGCAACCCTTCTGGTTTATCCACTCAGATGTACAGTTCAAATAAACAGAAGTTTAAGCATGTTACAGAATCTAACCACTTGGACAGTTACAACCAGCAGAGCTTCCCCGAGTCCTCCACTGCAGAGTTGCATGCGTTGCAAGCCAACGTCTATCACCCATCTAACTCTGGTGTTCCTGGGGGGGCGTTCTGCCCCCAAGTTTCCTGTTCTTCTGCTACCGCACACAACTCATATTTGGAGAAAATCTTGGATCCAATAGACTCTGGTGAAGATAATATTAGGTTAAAGCTTAGAGAACTGGAGAGTGCACTGTTGAATGATAATGATGAGGATGATTATTATTATAATGGTGGAATTAGCGGTCCAGAACATAACATGAATATTGATAGTGAATGGGCTGACTCGATCAAGGATATATTATTGCTGCCAAATTCACCAAAGGACTCTTCATCTGACTCCAACCTCAGTTACATATGCAGCAACAAAGAAACATCAGCCTTGACTCCTAAACTGGTGACTGTTGTAGAGCAGGATGTGAACACAAACACTGCCCCATTTTTCCCCAGGTTTATTGAAGCTTATAACTATTACTCGGCTGTGTTTGAATCACTTGATGCAACATTGCCCAGAGAGAACCCAGACAGGATTAATGTTGAAAAGCACTGCCTTGCTAGAGATATAGTAAACATTGTAGCATGTGAAGGCGAGGAGAGGATAGAGAGGTATGAGGTTGCGGGGAAATGGAGGGCAAGGATGACAATGGCCGGATTCAGACCATGTCCATTGAGCTCATCTGTGAATAACTCAATCCAAGAGCTTCTAAAACAGTACTGCAACCGGTATAAGGTGAAGCAGGAGGGTGGTGCACTTCATTTTGGGTGGGAAGACAAAATCTTAATAGTTGCTTCTGCATGGAGGTGA | 996 | 43.57 | MSLIRPADSSAPSYGESRIYQAKGSSNPSGLSTQMYSSNKQKFKHVTESNHLDSYNQQSFPESSTAELHALQANVYHPSNSGVPGGAFCPQVSCSSATAHNSYLEKILDPIDSGEDNIRLKLRELESALLNDNDEDDYYYNGGISGPEHNMNIDSEWADSIKDILLLPNSPKDSSSDSNLSYICSNKETSALTPKLVTVVEQDVNTNTAPFFPRFIEAYNYYSAVFESLDATLPRENPDRINVEKHCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFRPCPLSSSVNNSIQELLKQYCNRYKVKQEGGALHFGWEDKILIVASAWR* | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 22902951 | 22906517 | - | Vvi4g1306 | Vvi4g1306 | 786085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g1306 | 331 | PANTHER | GRAS FAMILY TRANSCRIPTION FACTOR | 90 | 191 | IPR030011 | GO:0003700|GO:0005634 | |
Vvi4g1306 | 331 | PANTHER | GRAS FAMILY TRANSCRIPTION FACTOR | 191 | 330 | IPR030011 | GO:0003700|GO:0005634 | |
Vvi4g1306 | 331 | ProSiteProfiles | GRAS family profile. | 1 | 331 | IPR005202 | - | |
Vvi4g1306 | 331 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Vvi4g1306 | 331 | MobiDBLite | consensus disorder prediction | 14 | 41 | - | - | |
Vvi4g1306 | 331 | Pfam | GRAS domain family | 190 | 331 | IPR005202 | - | |
Vvi4g1306 | 331 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 90 | 191 | IPR005202 | - | |
Vvi4g1306 | 331 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 191 | 330 | IPR005202 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi4g1306 | Vvi18g1195 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14722 | PF03514 | GRAS | 6.40E-51 | CL0063 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g1306 | - | - | vvi:100854518 | 361.303 |