Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1306 ATGTCTTTAATCAGACCTGCAGATTCATCTGCTCCTTCATATGGGGAGTCAAGAATTTACCAGGCCAAAGGAAGCAGCAACCCTTCTGGTTTATCCACTCAGATGTACAGTTCAAATAAACAGAAGTTTAAGCATGTTACAGAATCTAACCACTTGGACAGTTACAACCAGCAGAGCTTCCCCGAGTCCTCCACTGCAGAGTTGCATGCGTTGCAAGCCAACGTCTATCACCCATCTAACTCTGGTGTTCCTGGGGGGGCGTTCTGCCCCCAAGTTTCCTGTTCTTCTGCTACCGCACACAACTCATATTTGGAGAAAATCTTGGATCCAATAGACTCTGGTGAAGATAATATTAGGTTAAAGCTTAGAGAACTGGAGAGTGCACTGTTGAATGATAATGATGAGGATGATTATTATTATAATGGTGGAATTAGCGGTCCAGAACATAACATGAATATTGATAGTGAATGGGCTGACTCGATCAAGGATATATTATTGCTGCCAAATTCACCAAAGGACTCTTCATCTGACTCCAACCTCAGTTACATATGCAGCAACAAAGAAACATCAGCCTTGACTCCTAAACTGGTGACTGTTGTAGAGCAGGATGTGAACACAAACACTGCCCCATTTTTCCCCAGGTTTATTGAAGCTTATAACTATTACTCGGCTGTGTTTGAATCACTTGATGCAACATTGCCCAGAGAGAACCCAGACAGGATTAATGTTGAAAAGCACTGCCTTGCTAGAGATATAGTAAACATTGTAGCATGTGAAGGCGAGGAGAGGATAGAGAGGTATGAGGTTGCGGGGAAATGGAGGGCAAGGATGACAATGGCCGGATTCAGACCATGTCCATTGAGCTCATCTGTGAATAACTCAATCCAAGAGCTTCTAAAACAGTACTGCAACCGGTATAAGGTGAAGCAGGAGGGTGGTGCACTTCATTTTGGGTGGGAAGACAAAATCTTAATAGTTGCTTCTGCATGGAGGTGA 996 43.57 MSLIRPADSSAPSYGESRIYQAKGSSNPSGLSTQMYSSNKQKFKHVTESNHLDSYNQQSFPESSTAELHALQANVYHPSNSGVPGGAFCPQVSCSSATAHNSYLEKILDPIDSGEDNIRLKLRELESALLNDNDEDDYYYNGGISGPEHNMNIDSEWADSIKDILLLPNSPKDSSSDSNLSYICSNKETSALTPKLVTVVEQDVNTNTAPFFPRFIEAYNYYSAVFESLDATLPRENPDRINVEKHCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFRPCPLSSSVNNSIQELLKQYCNRYKVKQEGGALHFGWEDKILIVASAWR* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22902951 22906517 - Vvi4g1306 Vvi4g1306 786085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1306 331 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 90 191 IPR030011 GO:0003700|GO:0005634
Vvi4g1306 331 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 191 330 IPR030011 GO:0003700|GO:0005634
Vvi4g1306 331 ProSiteProfiles GRAS family profile. 1 331 IPR005202 -
Vvi4g1306 331 MobiDBLite consensus disorder prediction 1 41 - -
Vvi4g1306 331 MobiDBLite consensus disorder prediction 14 41 - -
Vvi4g1306 331 Pfam GRAS domain family 190 331 IPR005202 -
Vvi4g1306 331 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 90 191 IPR005202 -
Vvi4g1306 331 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 191 330 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1306 Vvi18g1195 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14722 PF03514 GRAS 6.40E-51 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1306 - - vvi:100854518 361.303