Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g131 ATGGATTCGAGGATGATGGGCTTCGATTCTCCACTCTTCTCTGCCCTCCAACACATGCTAGACGCCACCGATGACTCCGACAAGTCCGTCAGCGCCCCCACTCGCACCTACGTCCGCGACGCCAAGGCCATGGCGGCGACGCTGGCTGACGTCAAGGAGTACCCGAATTCCTACACCTTCATCGTCGACATGCCGGGGCTGAGGTCCGGCGACATCAAGGTTCAGGTGGAGGACGGCAATGTGCTGGTGATCAGCGGAGAGAGGAAGCGAGAGGAGGAGAAGGAAGGTGCCAAGTACGTAAGAATGGAGAGGAGAGTGGGGAAGTTTATGAGGAAGTTCGTGTTGCCGGAGAATGCGAATACTGATAAGATCTCTGCTGTATGTCAAGATGGGGTGTTGACCGTCACCGTCGAGAAGCTGCCACCGCCGGAACCCAAGAAGCCCAAGACCATTGAGGTCAAAATTGCTTGA 471 56.26 MDSRMMGFDSPLFSALQHMLDATDDSDKSVSAPTRTYVRDAKAMAATLADVKEYPNSYTFIVDMPGLRSGDIKVQVEDGNVLVISGERKREEEKEGAKYVRMERRVGKFMRKFVLPENANTDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKIA* 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1239833 1246496 - Vvi4g131 Vvi4g131 784910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g131 156 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 155 - -
Vvi4g131 156 SUPERFAMILY HSP20-like chaperones 15 148 IPR008978 -
Vvi4g131 156 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 156 IPR002068 -
Vvi4g131 156 Pfam Hsp20/alpha crystallin family 50 154 IPR002068 -
Vvi4g131 156 Gene3D - 5 155 IPR008978 -
Vvi4g131 156 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g131 K13993 HSP20; HSP20 family protein - vvi:100250883 278.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1781 Cmo01g01799 . . . . . . Cpe02g00280 Bhi09g03103 Tan01g4591 Cmetu07g1652 . . Mch11g0439 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74