Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1315 ATGCCTCTGTTTCAGTGGCAAGTAGCACCACACATTTGGAAAGTGCAAAAGGCGCTGTTGCAATCAGATGTCCAATCTAAATCAGATAAAAGCCCTGTCACAGTGGCTGACTATGGCTCACAGGCTGTAGTTAGTTTTATACTGCAGAGAGAACTTCCATCTGAATCTTTCTCATTAGTGGCTGAGGAGGATTCGGGAGATCTTCGCAAGGATGGTGCCCAAGAAACACTAGCACGCATTACTGAACTTGTGAATGATACTCTTACCAGTGATGGGACATGTATATCTCGTGTATCTGAGGAAGATGTTCTTACTGCCATTGACTCTGGTAAATCTGAAGGCGGTTCTAATGGCCAACACTGGGTTTTGGATCCTATTGATGGCACCAAAGGTTTTCTAAGAGGAGACCAGTATGCAATAGCATTAGCACTGCTAGATGAAGGAAAAGTGGTGTTGGGTGTCCTCGCTTGTCCAAATCTTCCCTTGGCATCCATTGGTGGTCAAGATCAGCATTCTTTACACAACCAAATTGGCTGCCTTTTCTCTGCTAAAATTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCATTTGAAGCAGCACACTCAAAGCATGACTTGTCTAGCTCCATAGCAAAGAAACTTGGAGTCAAAGCACCCCCAGTTAGAATTGATAGCCAGGCGAAGTATGGGGCTCTATCCAGAGGAGATGGGGCCATTTATCTTCGCTTCCCTCATAAAGGATATCGTGAAAAAATATGGGATCATGCTGCTGGATGCATTGTTGTGACAGAAGCTGGGGGTGAGGTGTCAGATGCGGCTGGGAACCCATTAGATTTTTCTAAGGGAAGATATCTTGATCTGGAGACAGGCATCATTGTCACGAATAAGAAGTTGATGCCATCGCTATTGAAGGCAGTTCGAGAGTGTCTTGATGAGAAACCTTCCTCATTGTAA 1020 44.9 MPLFQWQVAPHIWKVQKALLQSDVQSKSDKSPVTVADYGSQAVVSFILQRELPSESFSLVAEEDSGDLRKDGAQETLARITELVNDTLTSDGTCISRVSEEDVLTAIDSGKSEGGSNGQHWVLDPIDGTKGFLRGDQYAIALALLDEGKVVLGVLACPNLPLASIGGQDQHSLHNQIGCLFSAKIGEGTDMQPLDGSSPIKVHVSAIENPEEASFFESFEAAHSKHDLSSSIAKKLGVKAPPVRIDSQAKYGALSRGDGAIYLRFPHKGYREKIWDHAAGCIVVTEAGGEVSDAAGNPLDFSKGRYLDLETGIIVTNKKLMPSLLKAVRECLDEKPSSL* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23029802 23039786 + Vvi4g1315 Vvi4g1315 786094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1315 339 TIGRFAM bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase 14 335 IPR006239 GO:0006790|GO:0008441
Vvi4g1315 339 Gene3D - 7 202 - -
Vvi4g1315 339 PANTHER BNAA09G06680D PROTEIN 10 335 - -
Vvi4g1315 339 PANTHER PHOSPHATASE 10 335 - -
Vvi4g1315 339 Pfam Inositol monophosphatase family 29 331 IPR000760 GO:0046855
Vvi4g1315 339 ProSitePatterns Inositol monophosphatase family signature 2. 275 289 IPR020550 GO:0046854
Vvi4g1315 339 Gene3D - 203 338 - -
Vvi4g1315 339 CDD PAP_phosphatase 14 330 - -
Vvi4g1315 339 SUPERFAMILY Carbohydrate phosphatase 9 333 - -
Vvi4g1315 339 ProSitePatterns Inositol monophosphatase family signature 1. 121 134 IPR020583 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1315 K15422 SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57] - vvi:100244767 630.557
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1315 . . . Bda10g00403 . . . Bma15g00782 . . Cma03g01102 . Car03g00991 . Sed10g1074 . Cpe10g00329 Bhi03g01336 Tan03g1298 Cmetu08g0340 . Hepe04g1105 . . Cla01g01508 Cam01g1576 Cec04g1220 Cco04g1288 Clacu01g1601 Cmu01g1489 Cre04g1168 . . Cone6ag1270 . Lsi01g01160 . . Cme08g01092 . . . . Bpe10g00263 . . . . Cmo03g01085 . . . . . . . . . . . . . . . . . . . . . . Csa06g02772 Chy02g01062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009021 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32