Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1318 ATGCTGCTGCTCCAAAAAACTCTTCCGTCCTTCACAGGCAGTTTAGTGTTATTGGTGCAGCATAATGTGTGCAAGTTGAAGAATCATGGAAGATTTGGTTCAGACACCAAATTTTCTGGGGATGGATATTTCCGGAAGCATTTGAAATCAGGAAGGAGATACTTCTCCAAAAGCAGAGGGCCTTTTGTTTCTTGTTCCCTTGTACCTTCAACTAGTGAGCTAAGCGATGCACGGGTGATTTATTGTGTAGCTCCTGCCATGGGCCATAACCAGGAGTCACATCCGGAATCTAATTTTAGGGTTCCTGCAATTGTGAGTGCTCTGGAAAAGATGGAACTGTCACCAATGTTCCGTGGCTCAGAGATCCTTGAACTTCATAGTTTCAGTCCTGCTTCAGTGGAAGATATAGCAAGTGTTCACACAAAGGCCTATGTATCAGGTCTTGAGAAGAGTATGGATCAGGCTTCACAGAAAGGAATTATTTACATTGATGGCTCTGGACCAACATATGCTACTGCAACTACTTTCCAAGAATCACTACTTGCAGCTGGAGCAGGAATCACCTTAGTTGATTCAGTGGTAGCAGCATCAAAGAGCAGCCAGGACCCACCAATGGGTTTTGCTTTGATAAGACCTCCAGGTCATCATGCAATTCCAAAAGGTCCTATGGGCTTTTGTGTTTTTGGAAATGTGGCCATTGCAGCTCGTTATGCCCAACGTGTACATGGATTAAAGCGTGTGTTTATCATTGATTTTGACGTTCATCATGGGAATGGAACAAATGATGCATTCTATGATGACCCAGATATATTCTTCCTTTCAACTCATCAAGATGGAAGCTACCCTGGTACTGGTAAAATTGATGAGGTAGGCCATGGCAGTGGTGAAGGAGCGACACTAAATTTGCCCCTACCAGGAGGCTCAGGTGATATTGCCATGAGGACTGTTTTTGATGAAGTCATTGTACCATCTGCCCAGAGGTTCAAGCCAGACATAATTCTCGTCTCAGCTGGTTATGATGGGCATGTATTGGATCCGCTAGCCAGTCTGCAATTTACTACTGGAACATACTACATGCTTGCATCTAACATTAAACAGCTCGCCAAAGATCTATGTGGGGGCCGCTGCGTATTTTTCCTGGAAGGAGGATACAACCTCAGCTCGCTTTCATATTCAGTGGCAGACTCATTTCGTGCTTTTCTTGGGGAGCCAAGTTTGGCATCTGAGTTTGATGACCCTGCCATCTTATATGAAGAGCCGTCCACTAAGGTGAAACAAGCAATTCAAAAAGTTAAACACTTACATTCCCTGTGA 1314 44.22 MLLLQKTLPSFTGSLVLLVQHNVCKLKNHGRFGSDTKFSGDGYFRKHLKSGRRYFSKSRGPFVSCSLVPSTSELSDARVIYCVAPAMGHNQESHPESNFRVPAIVSALEKMELSPMFRGSEILELHSFSPASVEDIASVHTKAYVSGLEKSMDQASQKGIIYIDGSGPTYATATTFQESLLAAGAGITLVDSVVAASKSSQDPPMGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGHGSGEGATLNLPLPGGSGDIAMRTVFDEVIVPSAQRFKPDIILVSAGYDGHVLDPLASLQFTTGTYYMLASNIKQLAKDLCGGRCVFFLEGGYNLSSLSYSVADSFRAFLGEPSLASEFDDPAILYEEPSTKVKQAIQKVKHLHSL* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23072107 23108432 - Vvi4g1318 Vvi4g1318 786097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1318 437 Pfam Histone deacetylase domain 94 398 IPR023801 -
Vvi4g1318 437 CDD HDAC_classII 94 401 - -
Vvi4g1318 437 Gene3D Histone deacetylase domain 69 436 IPR037138 -
Vvi4g1318 437 PRINTS Histone deacetylase superfamily signature 212 235 IPR000286 -
Vvi4g1318 437 PRINTS Histone deacetylase superfamily signature 246 261 IPR000286 -
Vvi4g1318 437 PRINTS Histone deacetylase superfamily signature 330 340 IPR000286 -
Vvi4g1318 437 PANTHER HISTONE DEACETYLASE 51 436 - -
Vvi4g1318 437 PANTHER HISTONE DEACETYLASE 14 51 436 - -
Vvi4g1318 437 SUPERFAMILY Arginase/deacetylase 84 405 IPR023696 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1318 - - - vvi:100244854 878.241
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1318 . . . Bda10g00405 . . . Bma15g00779 . . Cma03g01104 . Car03g00993 . Sed11g1186 . Cpe10g00327 Bhi03g01333 Tan03g1296 Cmetu08g1459 . Hepe04g1102 . . Cla01g01506 Cam01g1574 Cec04g1218 Cco04g1286 Clacu01g1599 Cmu01g1487 . . . . . Lsi01g01162 . . Cme08g01094 . Blo06g00188 . . Bpe10g00264 . . . . Cmo03g01087 . . . . . . . . . . . . . . . . . . . . . . Csa06g02770 Chy02g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007674 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 32