Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1319 ATGGCATCAAGAACCTCAACTGTTGTCATGGCTCCCCCATCGGAGGAGAAGCATGACGTTGGATTTTTAGTTTTTGACCCAAAGAAGATGGCAAAACAAGAGCTTCCCAAACAGTTCATTTGGCCAAATGAAGATTTAGTTGAGGCCAAGGAAGAGCTTAATGAACCCTTGGTAGACATGGAGGGATTCTTGAAAGGTGATGAGGTTGCAACTGCCCATGCTGCCGAGCTTGTTCGACAAGCTTGCGTAACCCACGGCTTCTTCCAAGTTATCAACCATGGGGTTAACCCAGATATTCTCCGTGCTACAGAGGTTGGATTGGATCCTTACTTCAATCTACCCATGAGCAGGAAGCTCAGCATGCATAAGAAGGTTGATGAGTTATGCGGATACTGTGGTGCCCATTCTGATCGGTTTGCTGCTAAGTTGACATGGAAGGAGATGCTCACTTTTGAATACCATTTTAAGGGTGATACTGACTCTGAGGTAGCTGACTACTTCAAAAATGTGGTAGGTGAAGATTTTGAGGAGACAGGGTGGGTTTTCCAAAGATTCTGTGAAGCCATGAAGGATTTATCTCTAAAGATTTTTAAACTCTTGGCAATAAGCTTGAACTTAGAAGATACTTCATACTGTGAGAAATTTTTTGAGGATGGTTTTGCAGTCTTGAGATGTAACTACTATCCAGTTTGCCCGGAATCTGGCCTTACCTTTGGCACTGGCCCTCATTGTGACCCGACCTCTTTAACAATACTTCATCAAGATCAAGTTGGAGGGCTTGAAGTATTTTCAAATGAAAAATGGTATTATGTCAAGCCTCAGCCTGGTGCTCTTGTGATTAACATCGGTGACACCCTCATGGCATTAACCAATGGAATATACAAGAGTTGTTTGCACAGGGCTGCGGCAAAAAATGACAGAGACAGGATATCATTCGCTTACTTTATTAGCCCAAGGCAGGACAAGCTGGTTTCACCCATAAAAGATCTTATTGCTAGAGAAGGCTCAAAGAAATACCCTGATTTCAAATGGGAACAACTTTTAGACTTCACCCAAGTCCATGATCGCACTGATGATACTACCATCAAACGCTTCGTGGAATTCCTTGAGTCATCGGAAACTAAATAA 1128 42.91 MASRTSTVVMAPPSEEKHDVGFLVFDPKKMAKQELPKQFIWPNEDLVEAKEELNEPLVDMEGFLKGDEVATAHAAELVRQACVTHGFFQVINHGVNPDILRATEVGLDPYFNLPMSRKLSMHKKVDELCGYCGAHSDRFAAKLTWKEMLTFEYHFKGDTDSEVADYFKNVVGEDFEETGWVFQRFCEAMKDLSLKIFKLLAISLNLEDTSYCEKFFEDGFAVLRCNYYPVCPESGLTFGTGPHCDPTSLTILHQDQVGGLEVFSNEKWYYVKPQPGALVINIGDTLMALTNGIYKSCLHRAAAKNDRDRISFAYFISPRQDKLVSPIKDLIAREGSKKYPDFKWEQLLDFTQVHDRTDDTTIKRFVEFLESSETK* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23110637 23112150 - Vvi4g1319 Vvi4g1319 786098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1319 375 SUPERFAMILY Clavaminate synthase-like 32 355 - -
Vvi4g1319 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 219 318 IPR005123 -
Vvi4g1319 375 PRINTS Isopenicillin N synthase signature 78 95 - -
Vvi4g1319 375 PRINTS Isopenicillin N synthase signature 243 264 - -
Vvi4g1319 375 PRINTS Isopenicillin N synthase signature 278 304 - -
Vvi4g1319 375 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 24 370 - -
Vvi4g1319 375 Pfam 2OG-Fe(II) oxygenase superfamily 221 318 IPR044861 -
Vvi4g1319 375 Gene3D - 27 356 IPR027443 -
Vvi4g1319 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 56 164 IPR026992 -
Vvi4g1319 375 PANTHER GIBBERELLIN 20 OXIDASE 2 24 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1319 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - vvi:100249987 776.163
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1319 . . . . . . Bma09g00430 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo05g00535 . . . . Bpe06g00298 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007963 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 3 36