Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1320 ATGGATGTTAGAAGCAGCATGAAAGTTGTACTGCTGCCATGGTTGGCTCATGGTCACATTTCTCCATTCCTAGAGCTGGCTAAGAAGCTTTCAAGGAGGAACTTCTACATATATTTTTGTTCTACTCCTGTTAATCTCAGTTCCATCAAAGGTAAACTCACTGAGGAAGACTCTCTTTCAATAGAACTAGTAGAAATCCATCTTCCATCTCTTCCTGACCTTCCTCCACACTACCAAACAACCAATGGGCTCCCTCCCCATCTCATGCCCACCCTCAAAAAGGCCTTTGATATGGCAAGCCCTGGCTTTGCCGACATCCTAACAACTCTGAACCCGGATTTGATTATATATGATATCCTCCAGCCATGGGCACCAGTTGCAGCTTCTTCCCAAAATATTCCTGCTGTTCTGTTCCTAAGCACAGGAGCCACCCTTTTGGATCTTGAGGGGAAGCATATAGATCAGGCCTCTTGTCTAACTCAGAAGAAGGTGGTGCCTGTCGGTCCACTTGTTCAACACACCACCGACGAATTTGAGAAAGAGGAAATCATTGATGTGGAAGAGGCACTGCCAGAGGGGTTTCTTAGCAGAGTGGGAGAGAGAGGAAAGGTTGTGAAAGATTGGGCTCCACAGAGAGAAATACTAAATCATTCTAGCACTGGTGGGTTTGTGAGCCATTGTGGATGGAGTTCTGTAATGGAGAGCCTGAAGTTTGGAGTTCCAATTGTGGCCATTCCAATGCATCTTGATCAGCCATTAAATGCTAAAGTGGTGGAGAGTGTTGGCGTGGGTGTGGAGGTCAAGAGAGATGAGAATGGGAGGCTTGACAGAGAAGAGATAGCAAAGGTGATCAAGCAGGTGGTTGTTGAAAAATCTGGGGAAAATGTAAGCAGAAAGGTAAGAGAAATGAGTGAAAGCATGAGAAAGCAGGCAGAAGAAGAGATAGCTGAGGTGGTGGAGGAGCTGGTGCAACTGTGTAAAGGAGATGGGGCGGTCAGTTCAAAGTCTCCAACTCCCTAA 1020 46.27 MDVRSSMKVVLLPWLAHGHISPFLELAKKLSRRNFYIYFCSTPVNLSSIKGKLTEEDSLSIELVEIHLPSLPDLPPHYQTTNGLPPHLMPTLKKAFDMASPGFADILTTLNPDLIIYDILQPWAPVAASSQNIPAVLFLSTGATLLDLEGKHIDQASCLTQKKVVPVGPLVQHTTDEFEKEEIIDVEEALPEGFLSRVGERGKVVKDWAPQREILNHSSTGGFVSHCGWSSVMESLKFGVPIVAIPMHLDQPLNAKVVESVGVGVEVKRDENGRLDREEIAKVIKQVVVEKSGENVSRKVREMSESMRKQAEEEIAEVVEELVQLCKGDGAVSSKSPTP* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23134465 23135818 - Vvi4g1320 Vvi4g1320 786099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1320 339 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 204 296 IPR002213 GO:0008194
Vvi4g1320 339 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 7 320 - -
Vvi4g1320 339 Gene3D Glycogen Phosphorylase B; 181 312 - -
Vvi4g1320 339 Gene3D Glycogen Phosphorylase B; 3 148 - -
Vvi4g1320 339 PANTHER GLYCOSYLTRANSFERASE 144 185 - -
Vvi4g1320 339 PANTHER GLYCOSYLTRANSFERASE 181 330 - -
Vvi4g1320 339 PANTHER GLYCOSYLTRANSFERASE 3 144 - -
Vvi4g1320 339 ProSitePatterns UDP-glycosyltransferases signature. 208 251 IPR035595 -
Vvi4g1320 339 Coils Coil 301 328 - -
Vvi4g1320 339 PANTHER GLYCOSYLTRANSFERASE 181 330 - -
Vvi4g1320 339 PANTHER GLYCOSYLTRANSFERASE 3 144 - -
Vvi4g1320 339 PANTHER GLYCOSYLTRANSFERASE 144 185 - -
Vvi4g1320 339 CDD GT1_Gtf-like 7 305 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1320 - - K23522 qsu:112016123 353.984
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1320 Blo04g00928 . . . Bpe15g00439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002387 0 3 0 0 0 2 1 2 2 2 2 2 2 3 2 2 2 0 2 3 3 5 1 2 1 7 2 5 1 1 60