Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1321 ATGGCGTTGAGAGTGGGGCATAGTCGCTGCATCTCCACCTCTATTGCACTCAAACTCCAATTTTTTTCTATTACACCCTGCCACTTCTCATCCATCCCCCAACCCCCAGACGACGCCCTTTCCACAGGTCTTCCTTCCCTCCAGCCTTCATATGACGCTGATTTGATCTCCAAAATCCTCCTTCAACACCACAACCCTTTCCACGCTATGGAGTCCTCTCTTCAGCTCAACGGCATCGCCCTCTCCACTCACCTCGTTCACCAGACCCTTCTCCGCCTCAGAAACGTCTCCAAAATTGCCCTCTCCTTCTTCCTGTGGGCCAAGGACCAAGCCCATCATAGCCACGACGTTGTTTCCTACAACCTCATTATCGACATTCTCGCAAAAGTTCGGCAATTCGACGTTGCCTGGCAGTTCATCATCGAAATGGATCAAAATTCCCTGGAACCCACCTCTACTACCTTCCGTATTTTGATTCGGAGGTCGGTTTCGGCTGGGCTCACGCGCCAAGCTGTTCGGGCGTTTGATGACATGAGTTGTTTTGTCGAGAAGGATGCGGATTCTGATGATTTTTGTTATCTGCTCGATACCCTCTCTAAGTATGGGTATGTGAAGCTTGCTTCACAGATTTTTAATCAAAGGAAGTTCAAATTCGAGGCTAATGCCAAAATGTATACTATTTTGATATATGGGTGGTGTAAGATTAACCGAGTTAGCATAGCGGAGAGGCTGCTTGGTGAGATGGTAGAACGTGGGATTGAGGCGAATGTTGTTACATATAATGTGCTTTTGAATGGGATTTGCAGGAGGGCGAGTTTGCACCCTGATGACAGGTTTGAGAGGACAATTCGGGATGCAGAGAAGGTGCTCGATGAAATGCGCCAAAAGGGGATTGAGCCTGACGTAACAAGCTATTCCATTGTTATTCATGTGTATAGTAGGGCTCATAAACCTGAGTTGACACTTGATAAGTTGCGGATGATGAAAGATAAAGGGATATGGCCAACCGTGGCAACTTATACATCAGTGGTTAAGTGCCTTTGTTCATGTGGGAGACTTGAAGATGCTGAGGAGTTGGTTTCTGACATGGTGAAGGATGGGGTTAGTCCATCAGCTGCAACATACAACTGTTTCTTCAAAGAGTATAGGGGGAGGAAAGATTCAGATAATGCTTTGAGGTTGTATAGGAAGATGAAGGAAGAATATTCATGCTTGCCTGATATGCACACTTATAACATATTAGTGGGAATGTTTGTGAAGTTGAACCGCATGGAGATTGTGCAAGAGATATGGGATGATATGAAAACGAGTGGGGCAGGACCAGATTTGGATTCATATACACTGTTGATCCATGGGTTATGTGAGAAACAGAAGTGGAAAGAAGCTTGCCATTTTTTTGTGGAGATGATAGAGAAGGGGTATCTTCCTCAGAAAATCACTTTTGAGACACTTTACCGGGGCTTAATACAATCTGATATGTTGAAAACCTGGAGGAGATTGAAGAAGAAGCTTGAGGAAGAGTCAATAACATTCGGTTCTGAATTCCAACAGTATCACTTCAAGCCCTACAGGAGATGA 1578 45.12 MALRVGHSRCISTSIALKLQFFSITPCHFSSIPQPPDDALSTGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFFLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVSAGLTRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAKMYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKKLEEESITFGSEFQQYHFKPYRR* 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23141978 23143556 + Vvi4g1321 Vvi4g1321 786100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1321 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Vvi4g1321 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 524 - -
Vvi4g1321 525 Pfam PPR repeat family 116 160 IPR002885 -
Vvi4g1321 525 Pfam PPR repeat family 335 381 IPR002885 -
Vvi4g1321 525 Pfam PPR repeat family 406 454 IPR002885 -
Vvi4g1321 525 Pfam PPR repeat family 221 269 IPR002885 -
Vvi4g1321 525 TIGRFAM PPR: pentatricopeptide repeat domain 445 476 IPR002885 -
Vvi4g1321 525 TIGRFAM PPR: pentatricopeptide repeat domain 118 151 IPR002885 -
Vvi4g1321 525 TIGRFAM PPR: pentatricopeptide repeat domain 224 256 IPR002885 -
Vvi4g1321 525 TIGRFAM PPR: pentatricopeptide repeat domain 409 442 IPR002885 -
Vvi4g1321 525 TIGRFAM PPR: pentatricopeptide repeat domain 339 371 IPR002885 -
Vvi4g1321 525 Gene3D Tetratricopeptide repeat domain 382 512 IPR011990 GO:0005515
Vvi4g1321 525 Gene3D Tetratricopeptide repeat domain 62 185 IPR011990 GO:0005515
Vvi4g1321 525 Gene3D Tetratricopeptide repeat domain 279 381 IPR011990 GO:0005515
Vvi4g1321 525 Pfam PPR repeat 304 333 IPR002885 -
Vvi4g1321 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Vvi4g1321 525 Coils Coil 276 296 - -
Vvi4g1321 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vvi4g1321 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Vvi4g1321 525 Gene3D Tetratricopeptide repeat domain 186 278 IPR011990 GO:0005515
Vvi4g1321 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Vvi4g1321 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Vvi4g1321 525 PANTHER OS08G0369200 PROTEIN 30 524 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1321 - - - vvi:100265441 1063.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00303 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012927 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 3 1 1 28