Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1322 ATGCAGAGGAAGGAGGAGGGTGCACAAACGACGTCGTTTCAAGATCTTAAAACGACGCCGTTGCGAAATCTTCCTCCTGGAACTGAAAACAGCCGGATGGAATTGGTAGGAGAATCAGAAGAATCAGGCGGCGGCAGCGGCGGTGATGGCCGGTCTGTGGTGGTCGTGGGAGTGAAGCTGGATCAGCGGAGTAAAGAGTTGCTGACGTGGGCTCTGGTCAAGGTGGCGCAGTCCGGCGATCGAGTCGTCGCCGTTCATGTGCTCACCGACGCAGCTGCTGTCACTATGACTGGGGGAAAATCGTCCCTTCTCTCTCTTTTCGATACATTTAAAACCCTTCTCGCTGCATACGAAGGTTTCTGCAACTTGAAACAGGTTGAACTTAAGCTTAAGGTGTGTAGAGGGTCATCAGTTCCAAAAATTCTAGTCCGGGAAGCAAAATCGCATGCCAATGTGAAGGTTATCGTGGGAATTTCTAGGACTAACCACACAATCTGGCGGTCCCCAGCATGGGTTGCTAAGTATTGTGCGAGAAAACTATCTAGTAATTTCTCGGTTTTTGCTGTTGACAACGGGAAAATTGTTTTCCAGAGAAGAGCAACTGCCAAGACTACCGATTATTCTCGAGTGGTAGCGTTGAATCAAGATAGTGGGTCTTACTTACAGAAGGCCCGCTCGCTTTGTGGGAGGAATACCCTCATAAGGAGTTTCTTGAGTTGTTCGCCCTACTCATCTGTTTCATGTTCAAATTCTGTTGTGGTGGATGACTTTCCTGAGTTAAAACCTGTGAGGCTGAGCCTTCGCCGGATATTTTTACGAAACCGGCAATCCTCAGAGAAATCTTCTTTAAGAAAGATGCCTTTATCTCAATGGGTACTGAGACTACCTAGCTGCCATAATTCGGCAGTGGTCTATCCTGATAAAAAGCATAGCAGCTCCGATTCTGATCAGGATGAAGATCATAGTGCCAACTTGGATGGGGAGAAAGGTGCAATTTTGCTGCTTGGGTCTGATGCGGGCTTTACTCCGGAGTCGCCTAACGGATCCGCAAAGAGCCTTCCTAAAGAGTTGGAGGGTCTTCATGAAAAGTATTCATCCACCTGTAGATTATTTACCTACCAGGAACTTTTGTTGGCAACGTCTAACTTCAGGCCAGAAAACATGGTTGGAAAAGGTGGCAATAGTCAGGTGTATAAAGGTTGTCTTCCAGATGACCGGGAACTGGCAGTAAAAATTTTGAAGCAATCTGGGGATGTGTTGAAGGAGTTTGTGCTGGAAATTGAAATCATTACTACTTTACATCACAAGAACATAATCTCTCTGTTTGGGTTTTGCTTTGAGGACAACAATCTACTCTTGGTTTATGACTTTCTATCAAGAGGAAGCCTAGAAGAGAACCTTCATGGAAAGAAGAAGGATCCAATGACATTTGGTTGGGGAGAGAGATATAGGGTGGCTCTAGGTGTAGCTGAGGCACTGGACTATCTACACAATGGCTGTGGTCAACCTGTGATCCACAGGGATGTCAAATCTTCAAATATCCTTCTCTCAGATGATTTTGAGCCGCAGCTGTCAGATTTTGGACTTGCGGCATGGGCTAATACTGCTTCCCATAAAAATTGCCCTGATGTTGCGGGAACTTTTGGATACTTGGCTCCAGAATACTTCATGTATGGGAAGGTGAATGACAAAATTGATGTCTATGCGTTTGGTGTTGTACTCCTTGAGCTTCTTTCAGGTAGAAAGCCAATTAGCTCAGAATATCCAAAGGGCCAGGAGAGCCTAGTTATGTGGGCAAAGCCAATTTTAAGAAGTGGGAAGATTTCCAAGTTGTTAGATCCAGATTTGGACAGTAACTATGATGATCCGCAGATTGAGAGAATGGTTTTGGCTGCTACACTTTGCCTCCGACGTGCACCTAGATTTCGGCCTCAAATTGGTCTCGTTTTGAAGCTCCTCCTAGGTGACATGGAAATTATCCAGTGGGCAAAGCAACAAGTTAGTGCAATGGAAGGACAAGAAGTGGAAGGGGAATCTTTTCCTTCTAATATTCAATCCCATCTTAACCTTGCTTTGCTAGATTTGGAGGATGATTCACTTTCTATTAGCAGCACTGAGCAAAGCATCTCATTAGAGGATTATTTGCAAGGGAGATGGAGCCGCTCATCAAGCTTTGCCTAA 2181 45.44 MQRKEEGAQTTSFQDLKTTPLRNLPPGTENSRMELVGESEESGGGSGGDGRSVVVVGVKLDQRSKELLTWALVKVAQSGDRVVAVHVLTDAAAVTMTGGKSSLLSLFDTFKTLLAAYEGFCNLKQVELKLKVCRGSSVPKILVREAKSHANVKVIVGISRTNHTIWRSPAWVAKYCARKLSSNFSVFAVDNGKIVFQRRATAKTTDYSRVVALNQDSGSYLQKARSLCGRNTLIRSFLSCSPYSSVSCSNSVVVDDFPELKPVRLSLRRIFLRNRQSSEKSSLRKMPLSQWVLRLPSCHNSAVVYPDKKHSSSDSDQDEDHSANLDGEKGAILLLGSDAGFTPESPNGSAKSLPKELEGLHEKYSSTCRLFTYQELLLATSNFRPENMVGKGGNSQVYKGCLPDDRELAVKILKQSGDVLKEFVLEIEIITTLHHKNIISLFGFCFEDNNLLLVYDFLSRGSLEENLHGKKKDPMTFGWGERYRVALGVAEALDYLHNGCGQPVIHRDVKSSNILLSDDFEPQLSDFGLAAWANTASHKNCPDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSEYPKGQESLVMWAKPILRSGKISKLLDPDLDSNYDDPQIERMVLAATLCLRRAPRFRPQIGLVLKLLLGDMEIIQWAKQQVSAMEGQEVEGESFPSNIQSHLNLALLDLEDDSLSISSTEQSISLEDYLQGRWSRSSSFA* 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23153006 23156975 - Vvi4g1322 Vvi4g1322 786101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1322 726 PANTHER OS01G0253100 PROTEIN 52 217 IPR045271 GO:0004714|GO:0006468
Vvi4g1322 726 PANTHER OS01G0253100 PROTEIN 236 720 IPR045271 GO:0004714|GO:0006468
Vvi4g1322 726 MobiDBLite consensus disorder prediction 1 50 - -
Vvi4g1322 726 ProSiteProfiles Protein kinase domain profile. 383 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1322 726 SUPERFAMILY Protein kinase-like (PK-like) 364 653 IPR011009 -
Vvi4g1322 726 Pfam Protein kinase domain 386 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1322 726 MobiDBLite consensus disorder prediction 1 26 - -
Vvi4g1322 726 Gene3D Phosphorylase Kinase; domain 1 349 457 - -
Vvi4g1322 726 SMART serkin_6 383 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1322 726 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 52 217 - -
Vvi4g1322 726 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 236 720 - -
Vvi4g1322 726 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Vvi4g1322 726 Gene3D HUPs 52 189 IPR014729 -
Vvi4g1322 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Vvi4g1322 726 Gene3D Transferase(Phosphotransferase) domain 1 458 671 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1322 - - - vvi:100243137 1317.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1322 Vvi18g1149 ECH
Vvi3g160 Vvi4g1322 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76602 PF00069 Pkinase 1.20E-41 CL0016 Vvi PK