Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1323 ATGAAAATTCTGATTAAAAGAAGGGTAAACTCCACTCATGTAGGTCTGTTGATCCGCTTGTTCAGGGCTTCCGGAATTGTGCAAGAACAACTTGGGCATCCCATATGGGGCTCCTATGCACAACGGTTGTTGGACCCTGGGGCAGGACTCTGGAGAAACCCTAGTAATGGTGGCCATGATGATAAAGCCCACCCACCCATTCACCCAACAAAATTCTCTGCTGGAGAATCTGGATGGAGTCAAGACCACCAGAGATTGTATGAGTTGGTTGTTCGCCATTTCTTGGCATGCGTTTCACAGCCAGCTGTAGGTGCTGAGACAATTGTTGAAATTGATATTGCCGGTGAATCATTTTCTTCATCAGGGAGAGTGATAATAGCTAAAAATTACCTAGATGTTTACCGGTTTGAATCATGGGGAGGCTCTATGATCCCAACATATGTCTTTGGACAACAGTTTATTCCAACAACATTGACTCTTGATTCTGGAGTTACTAGACCACCCCCACTTTTAAGTGAAGCTGATTTGCTAAACTGCATGGACAAGGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAAATCTTGGTGAAGCGCTGGTAATGGGTTATGATGACATGGGGTATGAACTCTGGAAACCATATCTTAGATCAATGATGGAATGTGACATGAAAGCAGTCAGTATAGGCACAAAAAGGAGAAATGAAGTTTTAACAACTTGCTTGGAGCAGATGAAAGCTTGCTTTTTAGATGCAAGGCTGAACAAAGTAAAACTCTTAGAAGCCATGGCACTTTTCTTTGAGAGATCTAATAGATCTAGTGGGGATGAGCAGCATGAAGTTGGAGATGTTGTTCGACAATGCACTCTTTGCCAGGAATCAGATATGGTCCTGAGGCGAAAACCAGATGGCAATTTCATGGTTGGATGCTTGGGTTATCCACAGTGTAGGAATGTTGTCTGGCTTCCTGGATCCATATCAGAAGCAGCCATTACCACTATTTCTTGTAACCATTGTACTCCAGGTCCTGTTTACAAGATTCAATTTAAGTTTCGCCGGCTAGAAATTCCACCGAATTACAATATCGATCATTTGGGTTGTGTTTGTGGCTGTGATGAGATTCTTAGACAGTTGACAGAAATTTGCGGAACTGGCTCCCGCATTTCAGCAAGAGGGCGAGGATCAAATGCATCTTCCACCAATGCACAACGAAGTAATACTAGGCAGACTGCTTGCATTCACTGCAGCCAAACAGGGCATTCTTCAAATGATTGCCCTTCTCGGGTTCCGCGCTCTCGGAATTCTCAGTCTCATCGAACAAATATGCCAAGCGGAGAATCTTCAATTCCATGTAATGTATGTGGAACACCTTGCATATTGCGGACTGCCAACACTGAAAATAACAGGGGAAGAAAGTTCTACTCATGTCAATCTCAGGAGTGCAACTTCTTTGTATGGGAGGATAGCCTCAACAGCAGCAGTGGGGGAAGAAGTGCTCAACCTGCAACTGCCAGGAGCTCAGCGTCTAATCCCAGCAGGAGGGGTGGCCGAGGCAGAGGTGACCGTGGCAGGGGTCGTCAGAGTGGAGCACGCACCAGCGACACCACTTTCGTGTCAGCAACTGGTGATCCTGTATCTGGTAGAAGATGTTTCGTTTGTGGAGATCCATCACATTTTGCAAATGTCTGCCCTAATCGAGGAATGTGA 1770 45.08 MKILIKRRVNSTHVGLLIRLFRASGIVQEQLGHPIWGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESGWSQDHQRLYELVVRHFLACVSQPAVGAETIVEIDIAGESFSSSGRVIIAKNYLDVYRFESWGGSMIPTYVFGQQFIPTTLTLDSGVTRPPPLLSEADLLNCMDKAGIGTDATMHDHIKKLLDRFYATKDSNTRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARLNKVKLLEAMALFFERSNRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHCTPGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQLTEICGTGSRISARGRGSNASSTNAQRSNTRQTACIHCSQTGHSSNDCPSRVPRSRNSQSHRTNMPSGESSIPCNVCGTPCILRTANTENNRGRKFYSCQSQECNFFVWEDSLNSSSGGRSAQPATARSSASNPSRRGGRGRGDRGRGRQSGARTSDTTFVSATGDPVSGRRCFVCGDPSHFANVCPNRGM* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23170211 23225736 - Vvi4g1323 Vvi4g1323 786102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1323 589 Pfam DNA topoisomerase 39 259 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g1323 589 Pfam Topoisomerase DNA binding C4 zinc finger 307 344 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Vvi4g1323 589 MobiDBLite consensus disorder prediction 438 469 - -
Vvi4g1323 589 PANTHER PROKARYOTIC DNA TOPOISOMERASE 24 371 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vvi4g1323 589 PANTHER DNA TOPOISOMERASE 3-ALPHA 24 371 - -
Vvi4g1323 589 MobiDBLite consensus disorder prediction 513 534 - -
Vvi4g1323 589 MobiDBLite consensus disorder prediction 513 561 - -
Vvi4g1323 589 SUPERFAMILY Retrovirus zinc finger-like domains 562 587 IPR036875 GO:0003676|GO:0008270
Vvi4g1323 589 Pfam GRF zinc finger 471 510 IPR010666 GO:0008270
Vvi4g1323 589 Gene3D - 410 463 - -
Vvi4g1323 589 ProSiteProfiles Zinc finger CCHC-type profile. 569 586 IPR001878 GO:0003676|GO:0008270
Vvi4g1323 589 SUPERFAMILY Retrovirus zinc finger-like domains 416 453 IPR036875 GO:0003676|GO:0008270
Vvi4g1323 589 SUPERFAMILY Prokaryotic type I DNA topoisomerase 39 314 IPR023405 -
Vvi4g1323 589 SMART topIaneu2 5 222 IPR003602 GO:0003677|GO:0003916|GO:0006265
Vvi4g1323 589 ProSiteProfiles Zinc finger CCHC-type profile. 433 448 IPR001878 GO:0003676|GO:0008270
Vvi4g1323 589 SMART c2hcfinal6 432 448 IPR001878 GO:0003676|GO:0008270
Vvi4g1323 589 SMART c2hcfinal6 570 586 IPR001878 GO:0003676|GO:0008270
Vvi4g1323 589 Gene3D Topoisomerase I, domain 4 21 100 IPR013826 -
Vvi4g1323 589 Gene3D Bacterial Topoisomerase I, domain 1 296 348 - -
Vvi4g1323 589 Gene3D Topoisomerase I, domain 3 101 168 IPR013825 -
Vvi4g1323 589 Gene3D Topoisomerase I, domain 2 169 270 IPR013824 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1323 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] - vvi:100248256 1152.89
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1323 . . . Bda10g00407 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007676 1 4 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 2 2 1 1 1 2 35