Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1325 ATGAAGGTGCTGAACGTGGCGGAGAAGCCGTCGGTGGCGAAGGCGGTGGCGACCATACTGTCAAGGAATCAAGGGCTAAGGGTGAGGGAAGGAAGGTCCCGCTACAACAAGCTCTTCGAGTTCAATTATTCCATTCGCGGCCAACACTGCCAAATGGTGGTCACCTCCGTCATTGGCCACCTCATGGAGCTCGAGTTCGAAGACCGCTTCCGCAAGTGGCACTCCTGTGACCCTGCCCACCTCTACCACGCTCCTGTCCGCAAGTTCGTCCCCGAGGACAAATTGGATATCAAGAGGACCTTGGAGGAGGAAGCTAGGAAGTGCCAGTGGCTTGTGTTGTGGCTTGATTGTGATAGAGAGGGAGAAAACATTGCATTTGAAGTGCTTGAGGTTTGCGCTCAGGTGAATCGTCATATCGATGTGTGGAGGGCTCGTTTCTCTGCTTTAATTGACAGGGAAATCCATGAATCTGTGCAGAATCTTGTTCGACCTAATCAATTGTTTGCTGATGCAGTGGATGTTAGGCAAGAAATAGATCTTCGGATTGGTGCTTCTTTCACTAGGTTTCAGACCATGCTGTTGAGAGATGCATTTGTTCTTGATTTTGCTGCTGATGATAGAAATCTTGTTCTAAGTTACGGTCCTTGTCAGTTCCCTACGCTTGGCTTTGTTGTTGAAAGGTATTGGGAGATACAGTCACATGAGCCTGAAGAGTTCTGGACAATCAACTGTTCTCACAAATCAGATGAAGGCACTTCTACTTTCAATTGGATGCGTGCACATCTATTTGATTATACTTGTGCTGTTATAATATATGAGATGTGCATTCAGGAACCTACTGCAACTGTCACAAAAGTTAGACAGCAGGAGAAGCTGAAGTATCCTCCACATCCTTTAAATACTATCGAGCTTGAAAAGCGTGCATCAAGATACTTCCACATGAGTTCTGAACACACCATGAAGGTGGCGGAGGATCTGTACCAAACTGGTTTCATCAGCTATCCTCGCACAGAGACTGATTACTTTTCCGAGAGAACTGATTTGCATTCCTATCTGATCAAAATTACAATGAAGAAAACAGAAAAGGAGGGCTCTGAATATGATAGGAGAGTGAGCTTGTGA 1122 46.08 MKVLNVAEKPSVAKAVATILSRNQGLRVREGRSRYNKLFEFNYSIRGQHCQMVVTSVIGHLMELEFEDRFRKWHSCDPAHLYHAPVRKFVPEDKLDIKRTLEEEARKCQWLVLWLDCDREGENIAFEVLEVCAQVNRHIDVWRARFSALIDREIHESVQNLVRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVLDFAADDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFWTINCSHKSDEGTSTFNWMRAHLFDYTCAVIIYEMCIQEPTATVTKVRQQEKLKYPPHPLNTIELEKRASRYFHMSSEHTMKVAEDLYQTGFISYPRTETDYFSERTDLHSYLIKITMKKTEKEGSEYDRRVSL* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23237230 23252027 - Vvi4g1325 Vvi4g1325 786104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1325 373 PANTHER DNA TOPOISOMERASE 3-ALPHA 1 356 - -
Vvi4g1325 373 Gene3D Topoisomerase I, domain 4 295 359 IPR013826 -
Vvi4g1325 373 SMART topIban2 140 241 IPR003601 GO:0003677|GO:0003916|GO:0006265
Vvi4g1325 373 Gene3D Topoisomerase I, domain 2 171 234 IPR013824 -
Vvi4g1325 373 Pfam Toprim domain 4 148 IPR006171 -
Vvi4g1325 373 PANTHER PROKARYOTIC DNA TOPOISOMERASE 1 356 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vvi4g1325 373 Pfam DNA topoisomerase 165 363 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g1325 373 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 324 338 IPR023406 GO:0003917
Vvi4g1325 373 PRINTS Prokaryotic DNA topoisomerase I signature 111 124 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g1325 373 PRINTS Prokaryotic DNA topoisomerase I signature 211 229 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g1325 373 PRINTS Prokaryotic DNA topoisomerase I signature 329 338 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vvi4g1325 373 Gene3D Topoisomerase I, domain 3 235 294 IPR013825 -
Vvi4g1325 373 SUPERFAMILY Prokaryotic type I DNA topoisomerase 2 356 IPR023405 -
Vvi4g1325 373 Gene3D - 1 164 - -
Vvi4g1325 373 ProSiteProfiles Toprim domain profile. 2 147 IPR006171 -
Vvi4g1325 373 CDD TOPRIM_TopoIA_TopoIII 2 161 IPR034144 -
Vvi4g1325 373 SMART toprim5 2 137 IPR006171 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1325 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] - vvi:100248256 722.235
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1325 . . . . . . . Bma15g00775 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00186 . . Bpe10g00267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007676 1 4 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 2 2 1 1 1 2 35