Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1328 ATGCCTGCCACCACAGCCACCAAGAAACGCCCTCAGCCGCCGCAGCCGTCTCCATCGCAGCCTCAGCCCAAGCACCAAGCATCATCCTCACCCTTGGCGGAAGAAGACCTCGACGAGGACGTTTTCCTCGAAGAAACCCTCATCCTCGAGGATGAGCACATCCTCCGCGACATCGAGGACCGCCGGGCCCTTGCCTCGCGCCTCTCAAAGTGGGCTCGTCCCCCTCTCTCCTCAGCCTACCTATCTTCGTCCCAGAGCATCGTTTTTCAGCAGCTGGAGATCGATTATGTGATCGGGGAGAGTCACAAGGAGCTTATGCCCAATTCGTCTGGCTCCGCGGCAATTATCCGGATCTTTGGGGTCACCAGGGAAGGACATAGTGTTTGCTGCAATGTTCATGGATTTGAGCCATATTTCTACATCAGCTGTCCTCCAGGAATGGGACCCGACGATATCTCTCGTTTTCATCAGGTTCTCGAGGGGAGGATGAGGGAGGTCAATAGGAACAGTAGGGTTCCCAAATTTGTCCGACGTATTGAAATGGTGCAGAAAAGGAGCATTATGTATTATCAGCTGCAGAGTTCCCACCCTTTCCTTAAAATTGTTGTTGCATTGCCAACAATGGTTACCAGCTGCCGTGGTATTCTTGACAGAGGCATACAAATTGAAGGTTTTGGCATGAAGAATTTTGTGACATATGAAAGCAATGTTCTTTTTGCTCTCCGTTTCATGGTTGATTGCAACATTGTTGGAGGAAATTGGATAGAAGTTCCTGCTGGAAAATATAAGAAAACAGCAAAGAACCTGTCTTATTGCCAGTTAGAGTTTGATTGCTTGTACTCAGAGTTGACCAGCCATATCCCAGAAGGTGAATTCTCAAAAATGGCTCCGTTCCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGCCATTTTCCTGAGCCAACCCATGATCCTGTTATCCAGGTGGCCAATCTTGTTACTTTGCAAGGAGAGGATCAGCCATTTGTCCGTAATGTTATGACCCTTAAGTCATGTTCGCCAATAGTTGGTGTCGATGTGATGTCATTTGAAACAGAAAGAGAAGTCTTGCTAGCTTGGAGGGACTTTATCCGTGAAGTGGACCCTGATATTATAATTGGATATAACATCTGCAAATTTGATTTGCCATATCTCATTGAGAGAGCTTCGGTCCTCGGAATAGCAGAATTTCCAATACTTGGCCGCATCAGGAATAGTCGGGTCCGTGTCAAAGATACCACTTTTTCTTCAAGACAGTATGGAACAAGGGAGAGTAAAGAAGTTACTGTGGAAGGGAGAGTGCAATTCGATTTGCTTCAGGTTATGCAACGGGATTATAAATTAAGTTCTTATTCACTGAATTCTGTGTCTGCACACTTTCTTTCTGAGCAGAAAGAGGATGTCCACCATTCAATAATATCTGATCTTCAGAATGGGAATGCGGAAACCAGGAGGCGGCTTGCTGTATACTGTTTGAAGGATGCTTATCTCCCACAGCGGCTTTTGGACAAACTGATGTTCATTTACAATTATGTTGAGATGGCTCGTGTTACAGGTGTCCCTATCTCCTTTCTTCTTTCCAGAGGGCAAAGCATTAAGGTACTTTCTCAACTTCTTAGGAAGGCAAAACAGAAGAACCTTGTTCTTCCCAATGTCAAACAAGCAGGATCTGAACAAGGAACATATGAAGGTGCAACTGTTTTGGAGGCGAACGCAGGATTCTATGAAAAGCCAATTGCAACATTGGATTTTGCATCACTATATCCATCTATCATGATGGCATATAATTTATGTTACTGCACACTGGTAACACCTGAAGATGTTCGCAAACTCAACCTCCCACCAGAATGTGTCAACAAAACTCCATCCGGTGAAATATTTGTTAAATCAAGTTTACAGAAGGGCATTCTTCCGGAAATTCTTGAAGAACTATTAGCTGCCCGTAAAAGAGCAAAAGCAGATTTGAAGGAAGCAAAGGATCCTCTTGAGAAGGCTGTGCTAGATGGTCGTCAGCTTGCCTTGAAGATAAGTGCGAATTCTGTATATGGGTTTACAGGAGCCACTGTTGGCCAGTTACCATGTATAGAGATATCTTCTAGTGTTACAAGCTATGGTCGGCAGATGATTGAGCACACAAAAAAACTGGTGGAAGAGAAATTTACAACACTTGGGGGCTATGAACATAATGCTGAGGTGATATATGGGGACACAGATTCAGTTATGGTGCTTTTTGGCGTGTCTACAGTGGAAGCAGCAATGAACTTGGGTAGAGAGGCAGCAGAATATATCAGTGGAACTTTCATGAAGCCCATCAAACTAGAGTTCGAGAAAGTTTATTATCCATATCTACTGATTAGCAAGAAAAGATATGCTGGTTTGTTATGGACAAACCCAGACAAGTTCGACAAAATGGATACGAAAGGCATTGAAACTGTTCGAAGAGACAATTGTCTATTGGTTAAAAATCTGGTAAAGGAATGCCTCCACAAAATACTAATTGACAGGGACATTCCTGGTGCAGTTCAGTATGTCAAGAATACAATTGCAGATCTTCTCATGAACCGCATGGATTTGTCACTTTTGGTTATTACTAAGGGTTTGACAAAGACTGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAACGCATGCGCAAGCGAGATGCTGCAACTGCTCCAAATGTTGGGGATCGAGTACCATATGTTATTATTAAAGCAGCAAAAGGTGCCAAGGCTTATGAAAGATCAGAAGACCCCATCTATGTGCTGGAAAATAACATACCAATAGACCCTCAATACTACCTCGAAAATCAAATTAGCAAGCCACTTTTAAGAATATTTGAACCCATTTTGAAGAATGCTAGCAAGGAGCTTCTCCATGGAAGTCACACAAGATCTATTTCCATCTCAACTCCTTCAAATAGTGGCATAATGAAATTTGCAAAGAAACAACTCAGTTGCATTGGCTGCAAAGCTCTAATTAGTAATACAGACAGAACTCTCTGCTCACACTGCAAGGGAAGAGAAGCTGAACTTTATTGTAAAACAGTAGCTAATGTGTCTGAGTTGGAGATGCTTTTCGGAAGGCTTTGGACACAGTGCCAGGAGTGCCAAGGTTCCCTCCATCAGGATGTGCTTTGTACAAGTCGAGATTGTCCAATATTTTATCGGAGAAAGAAGGCACAGAAAGACATGGCTGAAGCCAAGCTGCAATTAGAACGGTGGAACTTCTAA 3270 43.52 MPATTATKKRPQPPQPSPSQPQPKHQASSSPLAEEDLDEDVFLEETLILEDEHILRDIEDRRALASRLSKWARPPLSSAYLSSSQSIVFQQLEIDYVIGESHKELMPNSSGSAAIIRIFGVTREGHSVCCNVHGFEPYFYISCPPGMGPDDISRFHQVLEGRMREVNRNSRVPKFVRRIEMVQKRSIMYYQLQSSHPFLKIVVALPTMVTSCRGILDRGIQIEGFGMKNFVTYESNVLFALRFMVDCNIVGGNWIEVPAGKYKKTAKNLSYCQLEFDCLYSELTSHIPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEDQPFVRNVMTLKSCSPIVGVDVMSFETEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERASVLGIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVLPNVKQAGSEQGTYEGATVLEANAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPECVNKTPSGEIFVKSSLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEEKFTTLGGYEHNAEVIYGDTDSVMVLFGVSTVEAAMNLGREAAEYISGTFMKPIKLEFEKVYYPYLLISKKRYAGLLWTNPDKFDKMDTKGIETVRRDNCLLVKNLVKECLHKILIDRDIPGAVQYVKNTIADLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLSCIGCKALISNTDRTLCSHCKGREAELYCKTVANVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLERWNF* 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23288718 23356942 - Vvi4g1328 Vvi4g1328 786107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1328 1089 CDD DNA_polB_delta_exo 293 521 - -
Vvi4g1328 1089 Pfam DNA polymerase family B, exonuclease domain 122 465 IPR006133 -
Vvi4g1328 1089 ProSitePatterns DNA polymerase family B signature. 743 751 IPR017964 GO:0000166|GO:0003676
Vvi4g1328 1089 Gene3D - 297 515 IPR036397 GO:0003676
Vvi4g1328 1089 SUPERFAMILY Ribonuclease H-like 111 535 IPR012337 -
Vvi4g1328 1089 Gene3D Palm domain of DNA polymerase 570 800 IPR023211 -
Vvi4g1328 1089 TIGRFAM pol2: DNA polymerase (pol2) 563 960 - -
Vvi4g1328 1089 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 85 1089 - -
Vvi4g1328 1089 CDD POLBc_delta 570 963 - -
Vvi4g1328 1089 Pfam DNA polymerase family B 529 962 IPR006134 GO:0000166|GO:0003677
Vvi4g1328 1089 Gene3D Helix hairpin bin 644 696 - -
Vvi4g1328 1089 Pfam C4-type zinc-finger of DNA polymerase delta 999 1070 IPR025687 -
Vvi4g1328 1089 SMART polmehr3 296 755 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi4g1328 1089 SUPERFAMILY DNA/RNA polymerases 554 964 IPR043502 -
Vvi4g1328 1089 MobiDBLite consensus disorder prediction 1 36 - -
Vvi4g1328 1089 PRINTS DNA-directed DNA-polymerase family B signature 588 601 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi4g1328 1089 PRINTS DNA-directed DNA-polymerase family B signature 680 692 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi4g1328 1089 PRINTS DNA-directed DNA-polymerase family B signature 741 749 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi4g1328 1089 MobiDBLite consensus disorder prediction 7 21 - -
Vvi4g1328 1089 Gene3D - 817 972 IPR042087 -
Vvi4g1328 1089 Gene3D DNA Polymerase, chain B, domain 1 92 269 - -
Vvi4g1328 1089 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 85 1089 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1328 K02327 - vvi:100246530 2105.87