Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g1328 | ATGCCTGCCACCACAGCCACCAAGAAACGCCCTCAGCCGCCGCAGCCGTCTCCATCGCAGCCTCAGCCCAAGCACCAAGCATCATCCTCACCCTTGGCGGAAGAAGACCTCGACGAGGACGTTTTCCTCGAAGAAACCCTCATCCTCGAGGATGAGCACATCCTCCGCGACATCGAGGACCGCCGGGCCCTTGCCTCGCGCCTCTCAAAGTGGGCTCGTCCCCCTCTCTCCTCAGCCTACCTATCTTCGTCCCAGAGCATCGTTTTTCAGCAGCTGGAGATCGATTATGTGATCGGGGAGAGTCACAAGGAGCTTATGCCCAATTCGTCTGGCTCCGCGGCAATTATCCGGATCTTTGGGGTCACCAGGGAAGGACATAGTGTTTGCTGCAATGTTCATGGATTTGAGCCATATTTCTACATCAGCTGTCCTCCAGGAATGGGACCCGACGATATCTCTCGTTTTCATCAGGTTCTCGAGGGGAGGATGAGGGAGGTCAATAGGAACAGTAGGGTTCCCAAATTTGTCCGACGTATTGAAATGGTGCAGAAAAGGAGCATTATGTATTATCAGCTGCAGAGTTCCCACCCTTTCCTTAAAATTGTTGTTGCATTGCCAACAATGGTTACCAGCTGCCGTGGTATTCTTGACAGAGGCATACAAATTGAAGGTTTTGGCATGAAGAATTTTGTGACATATGAAAGCAATGTTCTTTTTGCTCTCCGTTTCATGGTTGATTGCAACATTGTTGGAGGAAATTGGATAGAAGTTCCTGCTGGAAAATATAAGAAAACAGCAAAGAACCTGTCTTATTGCCAGTTAGAGTTTGATTGCTTGTACTCAGAGTTGACCAGCCATATCCCAGAAGGTGAATTCTCAAAAATGGCTCCGTTCCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGCCATTTTCCTGAGCCAACCCATGATCCTGTTATCCAGGTGGCCAATCTTGTTACTTTGCAAGGAGAGGATCAGCCATTTGTCCGTAATGTTATGACCCTTAAGTCATGTTCGCCAATAGTTGGTGTCGATGTGATGTCATTTGAAACAGAAAGAGAAGTCTTGCTAGCTTGGAGGGACTTTATCCGTGAAGTGGACCCTGATATTATAATTGGATATAACATCTGCAAATTTGATTTGCCATATCTCATTGAGAGAGCTTCGGTCCTCGGAATAGCAGAATTTCCAATACTTGGCCGCATCAGGAATAGTCGGGTCCGTGTCAAAGATACCACTTTTTCTTCAAGACAGTATGGAACAAGGGAGAGTAAAGAAGTTACTGTGGAAGGGAGAGTGCAATTCGATTTGCTTCAGGTTATGCAACGGGATTATAAATTAAGTTCTTATTCACTGAATTCTGTGTCTGCACACTTTCTTTCTGAGCAGAAAGAGGATGTCCACCATTCAATAATATCTGATCTTCAGAATGGGAATGCGGAAACCAGGAGGCGGCTTGCTGTATACTGTTTGAAGGATGCTTATCTCCCACAGCGGCTTTTGGACAAACTGATGTTCATTTACAATTATGTTGAGATGGCTCGTGTTACAGGTGTCCCTATCTCCTTTCTTCTTTCCAGAGGGCAAAGCATTAAGGTACTTTCTCAACTTCTTAGGAAGGCAAAACAGAAGAACCTTGTTCTTCCCAATGTCAAACAAGCAGGATCTGAACAAGGAACATATGAAGGTGCAACTGTTTTGGAGGCGAACGCAGGATTCTATGAAAAGCCAATTGCAACATTGGATTTTGCATCACTATATCCATCTATCATGATGGCATATAATTTATGTTACTGCACACTGGTAACACCTGAAGATGTTCGCAAACTCAACCTCCCACCAGAATGTGTCAACAAAACTCCATCCGGTGAAATATTTGTTAAATCAAGTTTACAGAAGGGCATTCTTCCGGAAATTCTTGAAGAACTATTAGCTGCCCGTAAAAGAGCAAAAGCAGATTTGAAGGAAGCAAAGGATCCTCTTGAGAAGGCTGTGCTAGATGGTCGTCAGCTTGCCTTGAAGATAAGTGCGAATTCTGTATATGGGTTTACAGGAGCCACTGTTGGCCAGTTACCATGTATAGAGATATCTTCTAGTGTTACAAGCTATGGTCGGCAGATGATTGAGCACACAAAAAAACTGGTGGAAGAGAAATTTACAACACTTGGGGGCTATGAACATAATGCTGAGGTGATATATGGGGACACAGATTCAGTTATGGTGCTTTTTGGCGTGTCTACAGTGGAAGCAGCAATGAACTTGGGTAGAGAGGCAGCAGAATATATCAGTGGAACTTTCATGAAGCCCATCAAACTAGAGTTCGAGAAAGTTTATTATCCATATCTACTGATTAGCAAGAAAAGATATGCTGGTTTGTTATGGACAAACCCAGACAAGTTCGACAAAATGGATACGAAAGGCATTGAAACTGTTCGAAGAGACAATTGTCTATTGGTTAAAAATCTGGTAAAGGAATGCCTCCACAAAATACTAATTGACAGGGACATTCCTGGTGCAGTTCAGTATGTCAAGAATACAATTGCAGATCTTCTCATGAACCGCATGGATTTGTCACTTTTGGTTATTACTAAGGGTTTGACAAAGACTGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAACGCATGCGCAAGCGAGATGCTGCAACTGCTCCAAATGTTGGGGATCGAGTACCATATGTTATTATTAAAGCAGCAAAAGGTGCCAAGGCTTATGAAAGATCAGAAGACCCCATCTATGTGCTGGAAAATAACATACCAATAGACCCTCAATACTACCTCGAAAATCAAATTAGCAAGCCACTTTTAAGAATATTTGAACCCATTTTGAAGAATGCTAGCAAGGAGCTTCTCCATGGAAGTCACACAAGATCTATTTCCATCTCAACTCCTTCAAATAGTGGCATAATGAAATTTGCAAAGAAACAACTCAGTTGCATTGGCTGCAAAGCTCTAATTAGTAATACAGACAGAACTCTCTGCTCACACTGCAAGGGAAGAGAAGCTGAACTTTATTGTAAAACAGTAGCTAATGTGTCTGAGTTGGAGATGCTTTTCGGAAGGCTTTGGACACAGTGCCAGGAGTGCCAAGGTTCCCTCCATCAGGATGTGCTTTGTACAAGTCGAGATTGTCCAATATTTTATCGGAGAAAGAAGGCACAGAAAGACATGGCTGAAGCCAAGCTGCAATTAGAACGGTGGAACTTCTAA | 3270 | 43.52 | MPATTATKKRPQPPQPSPSQPQPKHQASSSPLAEEDLDEDVFLEETLILEDEHILRDIEDRRALASRLSKWARPPLSSAYLSSSQSIVFQQLEIDYVIGESHKELMPNSSGSAAIIRIFGVTREGHSVCCNVHGFEPYFYISCPPGMGPDDISRFHQVLEGRMREVNRNSRVPKFVRRIEMVQKRSIMYYQLQSSHPFLKIVVALPTMVTSCRGILDRGIQIEGFGMKNFVTYESNVLFALRFMVDCNIVGGNWIEVPAGKYKKTAKNLSYCQLEFDCLYSELTSHIPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEDQPFVRNVMTLKSCSPIVGVDVMSFETEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERASVLGIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVLPNVKQAGSEQGTYEGATVLEANAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPECVNKTPSGEIFVKSSLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEEKFTTLGGYEHNAEVIYGDTDSVMVLFGVSTVEAAMNLGREAAEYISGTFMKPIKLEFEKVYYPYLLISKKRYAGLLWTNPDKFDKMDTKGIETVRRDNCLLVKNLVKECLHKILIDRDIPGAVQYVKNTIADLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLSCIGCKALISNTDRTLCSHCKGREAELYCKTVANVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLERWNF* | 1090 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23288718 | 23356942 | - | Vvi4g1328 | Vvi4g1328 | 786107 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g1328 | 1089 | CDD | DNA_polB_delta_exo | 293 | 521 | - | - | |
Vvi4g1328 | 1089 | Pfam | DNA polymerase family B, exonuclease domain | 122 | 465 | IPR006133 | - | |
Vvi4g1328 | 1089 | ProSitePatterns | DNA polymerase family B signature. | 743 | 751 | IPR017964 | GO:0000166|GO:0003676 | |
Vvi4g1328 | 1089 | Gene3D | - | 297 | 515 | IPR036397 | GO:0003676 | |
Vvi4g1328 | 1089 | SUPERFAMILY | Ribonuclease H-like | 111 | 535 | IPR012337 | - | |
Vvi4g1328 | 1089 | Gene3D | Palm domain of DNA polymerase | 570 | 800 | IPR023211 | - | |
Vvi4g1328 | 1089 | TIGRFAM | pol2: DNA polymerase (pol2) | 563 | 960 | - | - | |
Vvi4g1328 | 1089 | PANTHER | DNA POLYMERASE CATALYTIC SUBUNIT | 85 | 1089 | - | - | |
Vvi4g1328 | 1089 | CDD | POLBc_delta | 570 | 963 | - | - | |
Vvi4g1328 | 1089 | Pfam | DNA polymerase family B | 529 | 962 | IPR006134 | GO:0000166|GO:0003677 | |
Vvi4g1328 | 1089 | Gene3D | Helix hairpin bin | 644 | 696 | - | - | |
Vvi4g1328 | 1089 | Pfam | C4-type zinc-finger of DNA polymerase delta | 999 | 1070 | IPR025687 | - | |
Vvi4g1328 | 1089 | SMART | polmehr3 | 296 | 755 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Vvi4g1328 | 1089 | SUPERFAMILY | DNA/RNA polymerases | 554 | 964 | IPR043502 | - | |
Vvi4g1328 | 1089 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Vvi4g1328 | 1089 | PRINTS | DNA-directed DNA-polymerase family B signature | 588 | 601 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Vvi4g1328 | 1089 | PRINTS | DNA-directed DNA-polymerase family B signature | 680 | 692 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Vvi4g1328 | 1089 | PRINTS | DNA-directed DNA-polymerase family B signature | 741 | 749 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Vvi4g1328 | 1089 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
Vvi4g1328 | 1089 | Gene3D | - | 817 | 972 | IPR042087 | - | |
Vvi4g1328 | 1089 | Gene3D | DNA Polymerase, chain B, domain 1 | 92 | 269 | - | - | |
Vvi4g1328 | 1089 | PANTHER | DNA POLYMERASE DELTA CATALYTIC SUBUNIT | 85 | 1089 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g1328 | K02327 | - | vvi:100246530 | 2105.87 |