Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1330 ATGGACTCGAGTGCCTCAACTATTCTCATGCCTCCTCCACTGGAGCTTAAGGATGAGAGGAAAAAAGGAAGTGTGGTTTTTGACTCATCTAAGATGCAAAAACAAGAGAAGTTGCCAACAGAATTCATTTGGCCTGATGCGGATTTAGTTCGGGCCCAACAAGAGCTTAACGAACCCTTGATAGACTTGGATGGATTCTTCAAAGGTGATGAGGCTGCAACTGCCCATGCCGCTGAGCTTATCAGGATGGCTTGCTTGAACCATGGCTTCTTCCAAGTTACCAACCATGGCGTCGACCTAGATCTTATCCGTGCTGCACAGGAAGACATGGGCGCTTTCTTCAAGCTGCCATTGAGCAGGAAGCTCAGTGTCAAGAAGAAGCCTGGCGAATTGTCAGGTTATTCGGGTGCCCATGCGGATCGGTACACTTCTAAGCTGCCGTGGAAGGAGACACTTTCTTTTGTCTATTGTTATGATAGTGGTTCCAAGCCCATGGTAGCTGATTATTTCAAAACTGCCTTAGGTGAAGACTTTGAACAGATAGGGTGGATTTATCAGAAATACTGTGACGCATTGAAGGAGCTGTCTCTAGGGATTATGCAACTCTTGGCAATTAGCTTGGATGTGGATAGTTCCTACTACAGGAAATTATTTGAAGATGGTTACTCAATTATGAGGTGCAACTCCTATCCACCTTGCAAAGAAGCTGGCCTTGTGATGGGCACCGGCCCTCACTGCGACCCAGTGGCTCTAACAATTCTTCATCAAGACCAAGTTAAAGGCCTAGAAGTTTTTGTGGATAACAAATGGCAATCTGTCAAACCTCGACCCGGTGCCCTGGTGGTTAACATTGGTGACACTTTCATGGCACTATCCAATGGAAAATACAAGAGCTGTATACATAGGGCTGTGGTGAACATGGACAAAGAGAGAAGATCATTGACCTTCTTTATGAGCCCGAAAGACGACAAGGTGGTGAGTCCGCCACAGGAGCTTATTGTCAGAGAAGGGCCAAGGAAGTACCCGGACTTCAAATGGTCAGAATTGTTGGAGTTCACTCAGAAGCACTATAGACCCAATAATGATACTCTCCAGAGCTTTGTGGAATGGCGTCTCTCATCTCAAACCAAATAA 1134 46.03 MDSSASTILMPPPLELKDERKKGSVVFDSSKMQKQEKLPTEFIWPDADLVRAQQELNEPLIDLDGFFKGDEAATAHAAELIRMACLNHGFFQVTNHGVDLDLIRAAQEDMGAFFKLPLSRKLSVKKKPGELSGYSGAHADRYTSKLPWKETLSFVYCYDSGSKPMVADYFKTALGEDFEQIGWIYQKYCDALKELSLGIMQLLAISLDVDSSYYRKLFEDGYSIMRCNSYPPCKEAGLVMGTGPHCDPVALTILHQDQVKGLEVFVDNKWQSVKPRPGALVVNIGDTFMALSNGKYKSCIHRAVVNMDKERRSLTFFMSPKDDKVVSPPQELIVREGPRKYPDFKWSELLEFTQKHYRPNNDTLQSFVEWRLSSQTK* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23382367 23384135 - Vvi4g1330 Vvi4g1330 786109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1330 377 Pfam 2OG-Fe(II) oxygenase superfamily 224 320 IPR044861 -
Vvi4g1330 377 Pfam non-haem dioxygenase in morphine synthesis N-terminal 59 157 IPR026992 -
Vvi4g1330 377 Gene3D - 29 358 IPR027443 -
Vvi4g1330 377 PRINTS Isopenicillin N synthase signature 81 98 - -
Vvi4g1330 377 PRINTS Isopenicillin N synthase signature 245 266 - -
Vvi4g1330 377 PRINTS Isopenicillin N synthase signature 308 326 - -
Vvi4g1330 377 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 18 373 - -
Vvi4g1330 377 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 18 373 - -
Vvi4g1330 377 SUPERFAMILY Clavaminate synthase-like 32 359 - -
Vvi4g1330 377 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 221 320 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1330 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - vvi:100255041 773.467
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1330 Vvi18g1101 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1330 . . . . . . . . . . Cma03g01109 Cma07g00811 Car03g01002 Car07g00798 . Cpe19g00512 Cpe10g00323 . . . . . . . Cla01g01490 Cam01g1558 Cec04g1205 Cco04g1272 Clacu01g1584 Cmu01g1473 Cre04g1154 . . Cone6ag1263 . Lsi01g01170 . . Cme08g01138 . . . . . . . . . Cmo03g01099 Cmo07g00841 . . . . . . . . . . . . . . . . . . . . . Csa06g02740 Chy02g01095 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007963 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 3 36