Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1332 ATGGCGGAGAAGAAGAAAGCAATGAGTCTGAACGAGCGTCACAACCGTCTCCTCCAAGACCTATCTGCTCAGGCATCAAAGCACAAGCCAGAACAACAACCCTCCGCTCAAAACCACGCCCTTCTTTCATTCTCAACCATCTCTGAATTTCATTCTCCTCCAGACGAAGCAAAAGAAGAAGAAAAGCCAGTCAAAGTAAAGCTCCAAGGTAGACGCCGACTCTGCAAACTTTCATCGAATGACGATGATGAAAATACCAAAACTGGAGATGGATTTTACGAACCGAAATTTTCTGAAATTTCCGATTTCGATTCGCCTCATCATTGCAGCAATGCTGGTGGAAATGAAATTAGGGGTATTCTCAATGACTTGAGCTCGAGGCTTGAATCTCTGTCCATAGAAACAAAGAGAAATCCTAAAAGGGCTGATCAGACTCGGGAATCTTTAAATTTTGCTGCTGCTGATGTGGCTATCAATCAAGAAAAGAAACTTGATGTGCCCGAGTATGCAAGCGCATCTTCCTCATTTTCTGTTACTTCTGATGGGGCTGATTCTTCGCCAGATGCAGCCTGGGTTGGAGATGGTGTTGACAATGTAGTGGATGATCATGAAGCGGGGAGTGAGGTTGGAAGCGTGCATGATGTTGATAACTTCATCAGTAGGGTACATGGAAATAGGCACAACGGTGAAGCGGCAAACTCCAGAAGGGTGAATGTGAACTCTGTGCCTATGGGGCAATCTTCCGTTTGTGATTTCGAAGAAGAAGAAGAAGATGGTAATAGCGATGATTGTGTAATTTTGAGTGGCAAAAAAGTTGTTGAAGCAGCGGTCAGCCGAGGGAGCAAGTTTAAGGAAGAGTATGATGATTCAGATGTGGTTGATGTATTGGATGATTGTACTGATGGTTCCGTTTTGGAGGATGAGAGTGCCATCACTTTGAGTGGTCCTAGATCTACCTATAAGTTGCCTGGTAAAATTGCAAAAATGTTATATCCACATCAACGTGATGGGTTGAAGTGGCTATGGTCTCTACATTGTCAGGGTAAGGGCGGGATCTTAGGTGATGACATGGGTCTAGGAAAAACAATGCAGATTTGTGGGTTTTTAGCTGGATTATTTCATTCCTGTTTGCTTCGGAGGGCAGTGGTTGTGGCCCCCAAAACATTACTGTCTCATTGGATCAAGGAGTTATCAGCTGTGGGGCTTTCTGAGAAGACAAGAGAATACTATGGGACTTGTACAAAAACACGGCAATATGAACTGCAGTATGTACTTCAGGATAAAGGGGTGCTTCTCACAACTTATGATATTGTGCGGAACAATTCAAAATCGTTATGTGGGGGCAACTACTTTCATGATAAGAGAAGTGAGGATGATTTCACCTGGGATTATATGATACTTGATGAGGGACATCTCATAAAGAATCCCAGTACACAAAGGGCTAAAAGTTTGATGGAAATACCTTGTGCTCATCGTATTGTTGTTAGTGGCACACCAATACAAAACAATCTTAAGGAATTATGGGCGTTATTTAGCTTTTGTTGCCCCGAGCTTTTGGGTGACAAGAATTGGTTTAAGGTCAAATATGAGTCTCCCATTCTTCGTGGAAATGACAAAAATGCTTCTGATAGGGAAAAACATATTAGTTCAAGAGTTGCAAAGGAGCTTAGAGAACGTATTCAACCTTATTTCTTGCGTCGCTTAAAGAATGAGGTATTTCATGAAGATGATGCCTCAGAAACTGCCAAACTTTCTAAAAAGAACGAGATTATCGTGTGGCTAAGATTGACAAGTTGCCAGCGACAACTATATGAAGCTTTTTTGAACAGTGAGATCGTTCTTTCAGCTTTTGATGGCTCACCATTGGCTGCAATTACGATTCTGAAAAAAATATGTGATCATCCCCTCCTCTTAACAAAAAGAGCCGTTGAAGATGTGTTGGAAGGAATGGATTCAATGCTAAATCAAGAAGACCTTGGTATGGCGTCGAAGCTAGCGATGCACTTAGCAACCGCCTATGAGAGAGATGATTTCTTGGAGAAGAATGACAACGTTTCATCCAAAATGTCTTTTATATTAGCTTTACTGGATACTTTAATTCCAGAGGGGCATAATGTTCTTATCTTTTCTCAAACTCGCAAGATGCTTAATCTCATTGAGGAATTGCTAATATCCAATGGTTACAAGTTCTTACGCATTGACGGTACCACAAAAGCTAATGACAGAGTGAAGATTGTTAATGATTTCCAAGACGGTGTTGGGGCTCCTATATTTCTCCTGACATCTCAAGTTGGTGGTTTGGGCCTCACTTTAACAAAAGCAGACCGTGTGATTGTGGTTGATCCAGCTTGGAACCCAAGTACGGATAACCAAAGTGTTGACCGTGCTTACCGAATTGGCCAAACAAAGGACGTCATTGTGTACAGGTTAATGACATGTGGCACCATTGAAGAAAAGATATATAGAAAGCAGATATTCAAGGGGGGATTGTTTAGAACTGCAACTGAACACAAAGAACAAACTCGGTACTTCAGCCAACAGGACCTTCAAGAGCTTTTCAGCCTCCCTAAACATGGATTTGATGTCTCTGTCACTCAGCAACAATTGCATGAAGAGCATGATCACCAGCACAATATGGATGAATCTTTGAAAGAACACATAAAGTTCCTAGAAACTCAAGGTATAGCAGGAGTTAGCCATCACAATTTGCTTTTCTCCAAGACAGCACGCGTACTAGTTGTAGATGAAGAAGAGGAAGTGGCAAGGGCCAGCAGGACGGGAACTACATCCGTCATGAACAAATCTGCAGGCTCTTCACACGAACAAGATGTTGAATGGGCTCAGTATGCTTTCAAGCCAAAGGAGGTGAATCTGCATAAGACAAATTCTTCTGCAGACAGTGCAGGTAAACTGACAGAATCAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAGGCTACAGTTTCAAAGTTACCAGACAAGGGAGAGAGGATACAAAAGCAGATTGCTGAACTGAATTTAGAGCTTGATAAGATGAGGATGACAAAAAGAATTGAAACGGAAGTTATTGATTTGGATGATGTGACCGGAAAGCTTGAGAATGTGCTGAACCTGTAG 3132 41.95 MAEKKKAMSLNERHNRLLQDLSAQASKHKPEQQPSAQNHALLSFSTISEFHSPPDEAKEEEKPVKVKLQGRRRLCKLSSNDDDENTKTGDGFYEPKFSEISDFDSPHHCSNAGGNEIRGILNDLSSRLESLSIETKRNPKRADQTRESLNFAAADVAINQEKKLDVPEYASASSSFSVTSDGADSSPDAAWVGDGVDNVVDDHEAGSEVGSVHDVDNFISRVHGNRHNGEAANSRRVNVNSVPMGQSSVCDFEEEEEDGNSDDCVILSGKKVVEAAVSRGSKFKEEYDDSDVVDVLDDCTDGSVLEDESAITLSGPRSTYKLPGKIAKMLYPHQRDGLKWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSCLLRRAVVVAPKTLLSHWIKELSAVGLSEKTREYYGTCTKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLCGGNYFHDKRSEDDFTWDYMILDEGHLIKNPSTQRAKSLMEIPCAHRIVVSGTPIQNNLKELWALFSFCCPELLGDKNWFKVKYESPILRGNDKNASDREKHISSRVAKELRERIQPYFLRRLKNEVFHEDDASETAKLSKKNEIIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAAITILKKICDHPLLLTKRAVEDVLEGMDSMLNQEDLGMASKLAMHLATAYERDDFLEKNDNVSSKMSFILALLDTLIPEGHNVLIFSQTRKMLNLIEELLISNGYKFLRIDGTTKANDRVKIVNDFQDGVGAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTCGTIEEKIYRKQIFKGGLFRTATEHKEQTRYFSQQDLQELFSLPKHGFDVSVTQQQLHEEHDHQHNMDESLKEHIKFLETQGIAGVSHHNLLFSKTARVLVVDEEEEVARASRTGTTSVMNKSAGSSHEQDVEWAQYAFKPKEVNLHKTNSSADSAGKLTESEIKGRINRLSQILANKATVSKLPDKGERIQKQIAELNLELDKMRMTKRIETEVIDLDDVTGKLENVLNL* 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23417240 23454255 + Vvi4g1332 Vvi4g1332 786111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1332 1043 SMART helicmild6 717 800 IPR001650 -
Vvi4g1332 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 567 IPR027417 -
Vvi4g1332 1043 CDD SF2_C_SNF 685 811 - -
Vvi4g1332 1043 MobiDBLite consensus disorder prediction 15 50 - -
Vvi4g1332 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 583 862 IPR027417 -
Vvi4g1332 1043 SMART ultradead3 325 528 IPR014001 -
Vvi4g1332 1043 Pfam SNF2-related domain 333 637 IPR000330 GO:0005524|GO:0140658
Vvi4g1332 1043 Pfam Helicase conserved C-terminal domain 688 800 IPR001650 -
Vvi4g1332 1043 Gene3D - 589 889 IPR027417 -
Vvi4g1332 1043 MobiDBLite consensus disorder prediction 1 65 - -
Vvi4g1332 1043 Coils Coil 4 24 - -
Vvi4g1332 1043 Coils Coil 1000 1020 - -
Vvi4g1332 1043 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 850 IPR001650 -
Vvi4g1332 1043 PANTHER OS04G0692700 PROTEIN 290 925 - -
Vvi4g1332 1043 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 342 517 IPR014001 -
Vvi4g1332 1043 Gene3D - 313 588 IPR038718 -
Vvi4g1332 1043 PANTHER SNF2/RAD54 FAMILY MEMBER 290 925 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1332 K20093 ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-] - vvi:100261895 2028.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1332 Blo04g00920 . . . . . Bma09g00432 . . . Cma03g01112 . Car03g01005 . . . Cpe10g00321 . . . . . . . Cla01g01488 Cam01g1555 Cec04g1201 Cco04g1269 Clacu01g1581 Cmu01g1470 Cre04g1151 . . . . Lsi01g01173 . . Cme08g01140 Blo05g00528 . . Bda14g01013 . . . . . Cmo03g01102 . . . . . . . . . . . . . . . . . . . . . . Csa06g02737 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012490 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14725 PF00176 SNF2_N 1.80E-47 CL0023 Vvi TR