Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1333 ATGGCCCTAGCGATGAGTATTCACCTCACGCGCCTCCCCCGCCACTTCCCTTTCCCTTCACTCTTTCCTCGCTTTCCTCGAATTCTTAGCAACCCTTGTCATCTCACTTCTCGCCGAAAACCACGTCGAACCTTCACTTTCTTCACCTGCAACTTCACCGTCGCCGCCACTTCCGCCACTTATGGCAGGAATGATAATGTTGGGGCAGATAATGAAAGATATGATGTTATTGTGGTTGGAGGAGGCCATGCAGGCTGTGAAGCTGCCCTTGCATCTGCTCGTTTAGGGGCAAAAACTCTTCTTCTTACTCTAAATATTGATAGAATTGCATGGCAGCCTTGTAATCCTGCTGTAGGTGGACCTGCAAAGTCACAATTGGTACATGAAGTGGATGCACTCGGTGGTGAAATTGGAAAAGTTGCTGATAGGTGTTATTTACAAAAACGTGTTCTAAACATATCAAGAGGTCCTGCTGTTCGGGCATTGCGTGCACAGACTGATAAGAGGGACTATGCTTTGCAAATGAAAAACATTGTGGAGAGGCAAGCTTACTGTCCAAACCTTTCTATTAGAGAGGCGATGGTGACTGATATCCTACTAGGAAAGAATGACAATGTAGAAGGTGTTCGAACATTCTTTGGGATGGACTTCTATGCTCCTTCTGTTATTCTAACAACTGGCACTTTTATGAGCGGTAAAATTTGGGTTGGTAGAACTTCTATGCCTGCAGGGAGAGCTGACTATCTAAATTTAGAAGTTAAATACGTAAGGAAGTTAGAGAAATTGAAGATTGTGGAAAGTGGTAGAAAAGGTGAAAGAAGTAGGAAGTTTAGGAGACAACTTATTTTCTGTTATTCCCTTTTTAACCCTCCTAATTTTTCCTTCGCTCCCCCTGTTCCATACCTACTGCAAGGGCTTTGCACAGACGAAAATAATTTCAAAGAAAGCATGAAAAAGAATAAAGCCTCACTAAGGTTGGATTTATTGTTGCTTGATAGTTCCAGTCCCATCAGGGACCAACAAAACTCTAAGATACAATCGAATTCTCTTAGAAGCCAAAAAAAGGATTTTGTGAGTAGCACCGGTTTGCTTTCATTTGAAACAATTTTTAAAACAATAGGCAATTTTATTAAAACCATCCAAATGCATGTGAGCTGGTTTAGCTTTGATCCTGATTTCCATATTGAGAGGGAACAAATGTGCTGCTATCTGACACGTACTACAAAGAGCACTCACCAGCTAATTAAAGAAAATTTGCACGAAACTCCCACTTATGGGGGGTGGGTTGAAGCCAAGGGACCCAGATATTGCCCCTCCATTGAAGATAAGATTGTGAGATTTCAAGATAAAGAGTCTCATCAGATTTTTCTTGAACCAGAAGGTCGAAATGTGCCTGAGCTCTATGTGCAGGGGTTCTCAACTGGTTTACCTGAGAGACTGCAGTTACCACTCTTGAGGACATTACCTGGACTTGAAAACTGTTCAATGCTAAGGCCTGCTTATGCTGTAGAGTATGATTTCTTGCCTGCTTATCAGTGCTCGAGGTCTCTTATGACAAAGCAGATTGAAGGTCTTTTTTTCTCTGGACAGATCAATGGAACGACAGGCTATGAAGAAGCTGCAGCACAGGGTTTAATTTCTGGAATTAATGCTGCCAGATATTCAGATGGTAAATCCCTCATTGTTCTTGAGAGGGAAAGCAGTTACATAGGGACTTTGATAGATGATCTGGTTACCAAAGACCTTCGAGAGCCTTATCGAATGTTAACAAGCCGCTCAGAACATCGATTACTTCTTCGATCTGATAATGCGGATAGTCGTCTCACACCTTTGGGGCGTGAAATTGGTTTGATAGATGATAGACGTTGGAAAATATACCAGGACAAGCAAGCTCAAATTTCACAAGAAAAAAAGCGATTAAGAACTGTCCGGATTTCAGGGGGAGATTTGGCTTCTGATGTTACTCATTTGTCTGGTCAGCCAGTGAAGGACTCCTCAACTCTGGAGAGTATTCTTAAGAAACCGCATGTACAATATAAAGTTCTGGATAAGCATGGTTTTGGAAATGAACTTCTGTCCAAAATAGAGAAAGAATGTGTGGAGATTGATATCAAGTATGAGGGCTTTATTATGCGGCAGCAGAGCCAGCTCCAACAGATGGCTCGTCAGCAACACAGACCACTACCAGAGGACTTGGATTACTATGCAATGACAACTTTGTCTCTTGAGGCTCGTGAGAAACTATCCAAGATCCGGCCACAGACCATTGGTCAAGCAAGTAGAGTGGGTGGAGTGAGCCCTGCTGACATTACTGCTCTTCTCATCATCCTTGAAACCAACAGAAGAAAAGCCCAGGAACAAAGAAGGTGCCAGTTGCTGACTTCCGTCATGCCGCCCCCTCCTCTCTTCTCTCCTGTATTTGAAGAAACCCTAGCCGCCTCCTCTCTCTCTCTCTCGTCCAACATCTGTGGAGAAGAGGAGCAAAGTCGAGCGGGTTCACAGGGTTTCACTTCACCAACACTCGCTCTTCGAAAAGGTGTCTGTGTCTGGTTGGAGTAA 2559 43.45 MALAMSIHLTRLPRHFPFPSLFPRFPRILSNPCHLTSRRKPRRTFTFFTCNFTVAATSATYGRNDNVGADNERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADRCYLQKRVLNISRGPAVRALRAQTDKRDYALQMKNIVERQAYCPNLSIREAMVTDILLGKNDNVEGVRTFFGMDFYAPSVILTTGTFMSGKIWVGRTSMPAGRADYLNLEVKYVRKLEKLKIVESGRKGERSRKFRRQLIFCYSLFNPPNFSFAPPVPYLLQGLCTDENNFKESMKKNKASLRLDLLLLDSSSPIRDQQNSKIQSNSLRSQKKDFVSSTGLLSFETIFKTIGNFIKTIQMHVSWFSFDPDFHIEREQMCCYLTRTTKSTHQLIKENLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKESHQIFLEPEGRNVPELYVQGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDFLPAYQCSRSLMTKQIEGLFFSGQINGTTGYEEAAAQGLISGINAARYSDGKSLIVLERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKIYQDKQAQISQEKKRLRTVRISGGDLASDVTHLSGQPVKDSSTLESILKKPHVQYKVLDKHGFGNELLSKIEKECVEIDIKYEGFIMRQQSQLQQMARQQHRPLPEDLDYYAMTTLSLEAREKLSKIRPQTIGQASRVGGVSPADITALLIILETNRRKAQEQRRCQLLTSVMPPPPLFSPVFEETLAASSLSLSSNICGEEEQSRAGSQGFTSPTLALRKGVCVWLE* 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23459593 23532718 + Vvi4g1333 Vvi4g1333 786112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1333 852 SUPERFAMILY FAD/NAD(P)-binding domain 72 558 IPR036188 -
Vvi4g1333 852 Hamap tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 72 782 IPR004416 GO:0002098
Vvi4g1333 852 Pfam Glucose inhibited division protein A 75 248 IPR040131 -
Vvi4g1333 852 Pfam Glucose inhibited division protein A 386 558 IPR040131 -
Vvi4g1333 852 Gene3D - 728 778 IPR044920 -
Vvi4g1333 852 Pfam tRNA modifying enzyme MnmG/GidA C-terminal domain 562 774 IPR026904 -
Vvi4g1333 852 PANTHER GLUCOSE INHIBITED DIVISION PROTEIN A 64 784 IPR002218 GO:0008033|GO:0050660
Vvi4g1333 852 SMART GIDA_assoc_3_2 704 775 - -
Vvi4g1333 852 TIGRFAM gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 383 780 IPR004416 GO:0002098
Vvi4g1333 852 Gene3D - 341 431 - -
Vvi4g1333 852 ProSitePatterns Glucose inhibited division protein A family signature 1. 433 447 IPR020595 -
Vvi4g1333 852 PANTHER PROTEIN MTO1 HOMOLOG, MITOCHONDRIAL 64 784 IPR004416 GO:0002098
Vvi4g1333 852 PRINTS Pyridine nucleotide disulphide reductase class-I signature 75 97 - -
Vvi4g1333 852 PRINTS Pyridine nucleotide disulphide reductase class-I signature 222 231 - -
Vvi4g1333 852 Gene3D - 67 271 IPR036188 -
Vvi4g1333 852 Gene3D - 474 618 IPR036188 -
Vvi4g1333 852 Gene3D - 619 708 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1333 K03495 gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme - vvi:100243047 802.742
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1333 . . Bda04g00384 . . . Bma09g00435 . . . . Cma07g00816 . Car07g00803 . Cpe19g00508 . . . . . . . . Cla01g01487 Cam01g1554 Cec04g1200 Cco04g1268 Clacu01g1580 Cmu01g1469 Cre04g1150 . . Cone6ag1261 . Lsi01g01174 . . Cme08g01141 . . . . . . . . . . Cmo07g00845 . . . . . . . . . . . . . . . . . . . . . Csa06g02736 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008582 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34