Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1335 ATGCAACCAAGCACAACATCTACAAATGCTTGCATCAACAGTAGACCTGTCTCACCTTTCGGGGAGACTGTTGTACCAAGTTGTTTTACTGCCAAGGAGTTTGCTGATAGATCAGATGCATATAAGACAGGAAGATGTTCAGCAAATAGTGTGGATAGATGTCCTCACAATAAGTTTACCCAGGACACTGGAGATTACAATACCTTAGATTTTGAAACTCAAGCATATACCAGATCTCAGCTCAATGCTGTTAAGCAAGATGGTCATTCAGAAAAAAATTATGTACGGGCAGATCCGAGTTACCTGAAAACACTTGGTCAGGCTCATTCTGGATGGATTTTTGGTGCCATAGCTGAGCTGGTTGATAATTCCAGGGATGCCAAAGCGACTAAATTGGGCATTTCTATTGAGATGATATATTCAAAGAAAGCTGGTGAAGATATCCCAATGCTGTCAGTTAAAGATGATGGGCAAGGAATGACCCATAAGGAGATTGTTAGAATGGTTTCTTTTGGGCACAAACAACCTGATACAGATGATCCAGATCATATTGGAAGATTTGGCATTGGATTTAAGACTGGAGCAATGAGACTTGGCAGGGATGCTTTCGTTCTTACCCAGACTAGTAGTTCCAGATCTATAGCTTTTCTTTCACAATCTTTAAATGAAGGAAAAGATAATCTGGAGATCCCAATTGTGAGCTACTACAGACAAGGGCAGTTTATGGAACTGGATGAAAGTATCCAGTCTGAAGCTTTTGCTAAGTATAACTTGAAAGCTATAAGGGAATTTTCACCATTTAATAAGTACTCCATTGGCATGAAAGCAGGGTTGTTTTGTGAAAAAGGTACGGGAACACAAATATACATATGGAATTTGGATAAATGGGGCTCAGATTATTGTCTGGAATGGCATAATGGGATGAGTAGTGGGAGCTCCTTCTACCAAGGCGACATATTCATTCGCTCCAGACGGGTCAAATCTCGTCCTGGCCAGATCAGTCAAAAGGTGCCTTTAGACTATTCACTTCGATCTTATTTGGAAGTCATCTTCTTAAATCCACGGATGAAGATTTTTATTCAGGGCTCACTGGTTAAAAGCCGACCATTGGCAAAATCTTTGAATAATACTGTCATAGAGAATGGTATTGTCATGGGAAAACCTGTTCAACTAACTCTTGGTCGCTGTCAATTAGAATGGGAGCAGGCAAATTGCGGAATATTTTTGTATTGGCATGGCCGCTTAATCGAAGGTTACAAGAGAGTTGGTGGCATGATACACAATGCAGATATGGGTCGGGGTGTAATTGGTGTTATAGATGTTACTGATATAATGAATGATGGAAATGGTCATGTTTGGGTGCATAGCAACAAGCAAGGATTTCAGGACTGTGAACCTTATGCTCGGCTTGAGGAGTGGCTAGGTAGCAAAGCTGATGAATTCTGGGACACAAATTTTGATACTCTTCAGTTGAAAAAGGGAAATAATCTCTACAAACCTGACCACGAATGGGTACAATGTGACAAGTGTAGGAAGTGGCGGGTGCTAAGCTCTGGTTTTAGGGCTAATGACTTGCCTCAAGAGTGGTTTTGTTACATGGAGCCTTTCAATGGACTGTGTGAAATTCCTGAACAAAAGGTTGCACGAGGAGTGATTACAGTGTCTGCAAAACGATCTGGTTGTGATCCCTCACAGAAGCCTGTTCAGTGTGACAATGTGCAAATCTTACATTCCACCAGCTCACTGGAAAGTAAGTCATCAAGACTTCTCTTTCTTTCTCTATATCCTTAA 1791 41.04 MQPSTTSTNACINSRPVSPFGETVVPSCFTAKEFADRSDAYKTGRCSANSVDRCPHNKFTQDTGDYNTLDFETQAYTRSQLNAVKQDGHSEKNYVRADPSYLKTLGQAHSGWIFGAIAELVDNSRDAKATKLGISIEMIYSKKAGEDIPMLSVKDDGQGMTHKEIVRMVSFGHKQPDTDDPDHIGRFGIGFKTGAMRLGRDAFVLTQTSSSRSIAFLSQSLNEGKDNLEIPIVSYYRQGQFMELDESIQSEAFAKYNLKAIREFSPFNKYSIGMKAGLFCEKGTGTQIYIWNLDKWGSDYCLEWHNGMSSGSSFYQGDIFIRSRRVKSRPGQISQKVPLDYSLRSYLEVIFLNPRMKIFIQGSLVKSRPLAKSLNNTVIENGIVMGKPVQLTLGRCQLEWEQANCGIFLYWHGRLIEGYKRVGGMIHNADMGRGVIGVIDVTDIMNDGNGHVWVHSNKQGFQDCEPYARLEEWLGSKADEFWDTNFDTLQLKKGNNLYKPDHEWVQCDKCRKWRVLSSGFRANDLPQEWFCYMEPFNGLCEIPEQKVARGVITVSAKRSGCDPSQKPVQCDNVQILHSTSSLESKSSRLLFLSLYP* 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23547255 23557704 - Vvi4g1335 Vvi4g1335 786114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1335 596 Gene3D - 491 549 - -
Vvi4g1335 596 Gene3D - 83 275 IPR036890 -
Vvi4g1335 596 ProSiteProfiles Zinc finger CW-type profile. 498 548 IPR011124 GO:0008270
Vvi4g1335 596 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 45 567 IPR045261 GO:0016887
Vvi4g1335 596 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 115 234 - -
Vvi4g1335 596 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 104 295 IPR036890 -
Vvi4g1335 596 PANTHER OS06G0622000 PROTEIN 45 567 - -
Vvi4g1335 596 Pfam CW-type Zinc Finger 503 545 IPR011124 GO:0008270
Vvi4g1335 596 Pfam Morc6 ribosomal protein S5 domain 2-like 341 482 IPR041006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1335 - - - vvi:100253299 1199.5
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1335 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070732 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1