Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1339 ATGCAGCAAAGGGCTTTGTCCAACCCTAAGATTGAAGCCATCTGGAATTCGGTGGTGGTGGAAGGCCACGGAGATGAAAAGGGAAGACTTTTAGGAGGTGTAAAGGTTAAGAACGTGGTGAGCGGAGAGGTTTCTGATTTGAAGGTTTCGGGTCTCTTCTTTGCCATTGGCCACGAACCCGCCACCAAGTTCTTGGATGGGCAGCTGAAACTTGATTCGGATGGGTATGTAGTGACGGAGCCAGGGACTACTAAAACCAGCGTTCGTGGAGTTTTTGCTGCTGGAGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGGGTGCATGGCAGCATTAGATGCAGAGCATTACCTGCAAGAGATTGGATCCCAGGAAGGTAAAAGTGATTGA 405 50.37 MQQRALSNPKIEAIWNSVVVEGHGDEKGRLLGGVKVKNVVSGEVSDLKVSGLFFAIGHEPATKFLDGQLKLDSDGYVVTEPGTTKTSVRGVFAAGDVQDKKYRQAVTAAGTGCMAALDAEHYLQEIGSQEGKSD* 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23600815 23604300 - Vvi4g1339 Vvi4g1339 786118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1339 134 PRINTS Pyridine nucleotide disulphide reductase class-II signature 10 26 - -
Vvi4g1339 134 PRINTS Pyridine nucleotide disulphide reductase class-II signature 51 72 - -
Vvi4g1339 134 PRINTS Pyridine nucleotide disulphide reductase class-II signature 86 104 - -
Vvi4g1339 134 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 1 130 - -
Vvi4g1339 134 PRINTS FAD-dependent pyridine nucleotide reductase signature 49 65 - -
Vvi4g1339 134 PRINTS FAD-dependent pyridine nucleotide reductase signature 76 98 - -
Vvi4g1339 134 Pfam Pyridine nucleotide-disulphide oxidoreductase 3 112 IPR023753 GO:0016491
Vvi4g1339 134 SUPERFAMILY FAD/NAD(P)-binding domain 45 124 IPR036188 -
Vvi4g1339 134 PANTHER THIOREDOXIN REDUCTASE 1 130 - -
Vvi4g1339 134 Gene3D - 62 122 IPR036188 -
Vvi4g1339 134 Gene3D - 1 61 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1339 K00384 trxB, TRR; thioredoxin reductase (NADPH) [EC:1.8.1.9] - vvi:100263578 268.085
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1339 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002350 2 2 1 1 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 1 2 2 5 1 1 60