Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1340 ATGCCTGTTGCCGTCTTCGATAGTCTGGTGCTCACTGCTTCCAAGATTCTCCACAAAGAAGCAAACTGTGTTAGGATTGACCCCTCCCCCCTCGATTCCACCGTTGTAGTCGTCGGCGACGTCCATGGCCAGCTTCACGATGTAATCTTTCTCCTCCGGGACTCTGGCTTCCCTTCCCAAAACCGCTTCTACGTCTTTAACGGAGATTATGTCGATAGAGGCGCCTGGGGCCTTGAGACCTTTCTTCTCCTGCTCGCTTGGAAGGTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAATATTGCACGTCTGTATATGGTTTTGAGAAAGAAGTAATGACCAAATATGGTGATAAAGGGAAGCATGTCTACCGCAAATGTTTAGGATGCTTTGAAGGACTTCCTTTGGCCTCTATTATAGCTGAACGTGTTTATACTGCTCATGGAGGGCTTTTCCGTAGTGTAGCTGTTAACTTGCCTAAGAGATCCAAAGGAAAGAAAAATCGGAGAATAAGTTTTAACCCTGAAATGAAGTCACTTTCTCTTGGTTCTTTGGAGGAATTATCAAAAGCTAGGAGATCGGTTCTTGATCCTCCTTGGGAGGGTTTAAACCTGATTCCTGGTGATGTGCTGTGGTCAGATCCATCAATGAGCCCTGGTCTCTCTCCAAATAAAGAAAGAGGCATTGGTCTATTGTGGGGTCCTGATTGCACAGAGGATTTCTTGAAGAAGCTCCATCTAAAGTTGATTATTAGATCACATGAAGGGCCTGATGCAAGGGAAAAGCGACCTGGTCTTGCAGGAATGAAGGAAGGGTACACTATAGATCATGTTGTAGAGTCAGGAAAGTTAATTACTCTGTTTAGTGCTCCAGACTACCCACAATTTCAGGCAACTGAGGAGAGATACCAAAATAAAGGGGCCTATATTGTCCTAGAACCCCCTGATTTTGATAATCCTGTGTTTCATACTTTTGAAGCGATTACTCCAAGGCCTAAGGTAAATCCCTACTATGACTACGAGGATGTGATTGATTCTGATGAAGAATTGGACTTTAGCAGGAATGATGTACACTCCGCGGATGAAGGTCAATCAGTGCCTCTAGGGCTGATGGGGCTGGTGGAGATTTTGGAAGAAGAAGATACAAGCCCCAGTTCAACCGCCATCAAACCCAATAAACCCTACCAAAATCCTACTTCCATGGCTGATATAGAGTGCCCCAACATCCGAAACATATGCATACTGGCTCATGTCGATCACGGCAAAACCACCCTGGCCGACCACCTCATCGCGGCGGCCGCAGATGGCTTGGTCCATCCGAAGCAGGCCGGGCGTCTCAGATTCATGGACTACCTCGACGAGGAACAGCGGCGGGCCATCACCATGAAGAGCTCCTCGGTAACTCTGCGTTTCAACGATATCTACCACATCAACTTGATCGACTCTCCGGGTCACATGGATTTCTGCAGCGAGGTTTCCACGGCAGCGCGGCTCAGCGACGGCGCTCTGGTGCTGGTGGACGCCGTGGAGGGCGTTCACATCCAGACCCACGCCGTGCTCCGCCAGGCCTGGACCGAGCGGCTCTCACCCTGTCTTGTCCTTAATAAGATTGATAGATTGATTAGTGAGTTAAAATTGAGTCCTTTAGAGGCGTATTCTAAACTGGTCAGGATTGTTCATGAAGTTAATGGGATTATGAGCGCGTTTAAGTCACAGAAGTACTTGTCGGATGATACTTTCCAACCTCAGAAGGGGAATGTGGCGTTTGTGTGCGCTTTGGACGGGTGGGGTTTTAGGATAAATGATATGCTGCAGAAGGTGATTAAGTCCTTTAACTTGAATGTGTCAGCGCGGGAACTTCAGCATAAGGATCCAAAAGTTGTGCTTCTAGCTGTGTTGAGTCGATGGCTTCCCTTGTCGGATGCAATCTTGTCAATGGTGGTTAAGTGTATTCCGGATCCAATGAGAGCTCAATCTTTTCGTATCTCACGTTTGCTTCCCAAGAGAGAGGTTTCAGATGATGGGCCTAGCTCTAATAGGGGTCCAAATGGGGATATTTTAAACAATTCTACTGATGAAGGTGGAAGTGGTGAATCAGACGAATGCTTCATTGCATTTGCGAGGGTTTTCAGTGGGGTTCTTTTTGCAGGACAGAGAGTTTTTGTGCTTTCAGCTTTATATGATCCATTAAAACCGGAGGCAATGCAGAAGCATGTGCAGGAAGCTGAGTTGCACTCCTTGTACCTCATGATGGGTCAGGGGTTGAAACCAGTGGCATTAGCGAAGGCAGGGAATATTGTGGCAATCCGAGGCCTTGGCCAGCATATATTGAAAAGTGCAACTCTTTCATCCACAAAAAACTGTTGGCCTTTCTCGAGTTTGGTGTTTCAGGTTTCCCCAACGCTAAGAGTGGCAATTGAGCCTTCTGATCCTACAGATATGGGTGCCCTCATGAAAGGCTTGAGGCTTCTTAACCGGGCAGACCCATTTGTGGAAGTCTCTGTTTCTGCTAGGGGAGAACATGTGCTTGCTGCTGCGGGAGAAGTTCATCTTGAGCGTTGCATAAAAGATTTGAAGGATAGATTTGCAAGGGTAAGCTTGGAAGTCTCTCCACCACTTGTCCCCTATAAAGAGACTATCCAAGGTGAGGTAAGTGATCTACTAGAGAATTTGAAATCGTTAAGTGGGAGCTTGGATTATATTGAAAGGAAAACACCAAATGGAAGATGTTGTGATCGGGCTGAGAAATGTAAAGCAATGTGGCTACAGTTTCTTAAGAGGATCTGGGCACTTGGACCTAGGCAGATTGGTCCTAATATCCTCTTCACCCCAGATTCCAGAGGGGAGGATGTTGAATTTCCTGTTCTTCCATCTTCAGTTGTAACTCCGGCACTGTGCATGGAAGCTGAGAGTCTTGAGAGCAGTGTAATATCTGGATTTCAACTAGCTACTGCAGCTGGACCTTTATGCGAGGAACCAATGTGGGTGAAGGATGCTTGTAGGACAGCTGTGCTACAGAAGAAACCCCGGCTTGTGGAAGCCATGTATTTTTGTGAGTTGAACACTCCAACTGAATACCTAGGTCCTATGTATGCTGTGCTTGCTCTTTCTGAAAGCTTTGGTTTTCCGGATGAACTGAGGAGATGGACTTCTGGAGCTTCAAGTGCTTTACTTTTTGGAGATGGTTCTAGTGTTCTGCATAATACAGCAAGAAAACTCATAGATGCAGTGAGACGGCAAAAGGGCCTTCCGGTAGAGGAAAAGGTAGTCCAGCATGCAACAAAGCAGAGGACCCTGGCTCGTAAAGTATAG 3327 46.71 MPVAVFDSLVLTASKILHKEANCVRIDPSPLDSTVVVVGDVHGQLHDVIFLLRDSGFPSQNRFYVFNGDYVDRGAWGLETFLLLLAWKVFMPDRVFLLRGNHESKYCTSVYGFEKEVMTKYGDKGKHVYRKCLGCFEGLPLASIIAERVYTAHGGLFRSVAVNLPKRSKGKKNRRISFNPEMKSLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMSPGLSPNKERGIGLLWGPDCTEDFLKKLHLKLIIRSHEGPDAREKRPGLAGMKEGYTIDHVVESGKLITLFSAPDYPQFQATEERYQNKGAYIVLEPPDFDNPVFHTFEAITPRPKVNPYYDYEDVIDSDEELDFSRNDVHSADEGQSVPLGLMGLVEILEEEDTSPSSTAIKPNKPYQNPTSMADIECPNIRNICILAHVDHGKTTLADHLIAAAADGLVHPKQAGRLRFMDYLDEEQRRAITMKSSSVTLRFNDIYHINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWTERLSPCLVLNKIDRLISELKLSPLEAYSKLVRIVHEVNGIMSAFKSQKYLSDDTFQPQKGNVAFVCALDGWGFRINDMLQKVIKSFNLNVSARELQHKDPKVVLLAVLSRWLPLSDAILSMVVKCIPDPMRAQSFRISRLLPKREVSDDGPSSNRGPNGDILNNSTDEGGSGESDECFIAFARVFSGVLFAGQRVFVLSALYDPLKPEAMQKHVQEAELHSLYLMMGQGLKPVALAKAGNIVAIRGLGQHILKSATLSSTKNCWPFSSLVFQVSPTLRVAIEPSDPTDMGALMKGLRLLNRADPFVEVSVSARGEHVLAAAGEVHLERCIKDLKDRFARVSLEVSPPLVPYKETIQGEVSDLLENLKSLSGSLDYIERKTPNGRCCDRAEKCKAMWLQFLKRIWALGPRQIGPNILFTPDSRGEDVEFPVLPSSVVTPALCMEAESLESSVISGFQLATAAGPLCEEPMWVKDACRTAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLALSESFGFPDELRRWTSGASSALLFGDGSSVLHNTARKLIDAVRRQKGLPVEEKVVQHATKQRTLARKV* 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23610769 23623902 + Vvi4g1340 Vvi4g1340 786119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1340 1108 CDD MPP_PP7 1 344 IPR041754 -
Vvi4g1340 1108 PANTHER ELONGATION FACTOR-LIKE GTPASE 1 408 1107 - -
Vvi4g1340 1108 Gene3D - 877 1010 IPR014721 -
Vvi4g1340 1108 Gene3D - 408 620 IPR027417 -
Vvi4g1340 1108 CDD EF2 415 659 - -
Vvi4g1340 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 657 IPR027417 -
Vvi4g1340 1108 CDD EF2_snRNP_III 805 876 - -
Vvi4g1340 1108 Pfam Elongation factor Tu domain 2 708 787 IPR004161 GO:0005525
Vvi4g1340 1108 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 412 620 IPR000795 GO:0003924|GO:0005525
Vvi4g1340 1108 MobiDBLite consensus disorder prediction 681 699 - -
Vvi4g1340 1108 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 408 1107 - -
Vvi4g1340 1108 SUPERFAMILY Translation proteins 583 798 IPR009000 -
Vvi4g1340 1108 CDD aeEF2_snRNP_like_IV 876 1022 - -
Vvi4g1340 1108 ProSitePatterns Serine/threonine specific protein phosphatases signature. 98 103 IPR006186 GO:0016787
Vvi4g1340 1108 Gene3D - 1 368 IPR029052 -
Vvi4g1340 1108 MobiDBLite consensus disorder prediction 674 699 - -
Vvi4g1340 1108 TIGRFAM small_GTP: small GTP-binding protein domain 414 546 IPR005225 GO:0005525
Vvi4g1340 1108 CDD EF2_II 705 790 - -
Vvi4g1340 1108 Gene3D Elongation Factor G (Translational Gtpase), domain 3 804 876 - -
Vvi4g1340 1108 Pfam Elongation factor Tu GTP binding domain 413 657 IPR000795 GO:0003924|GO:0005525
Vvi4g1340 1108 SUPERFAMILY Metallo-dependent phosphatases 5 341 IPR029052 -
Vvi4g1340 1108 SUPERFAMILY Ribosomal protein S5 domain 2-like 879 1017 IPR020568 -
Vvi4g1340 1108 SMART pp2a_7 1 337 IPR006186 GO:0016787
Vvi4g1340 1108 Pfam Calcineurin-like phosphoesterase 34 262 IPR004843 GO:0016787
Vvi4g1340 1108 Gene3D Translation factors 623 799 - -
Vvi4g1340 1108 PRINTS Serine/threonine phosphatase family signature 34 61 IPR006186 GO:0016787
Vvi4g1340 1108 PRINTS Serine/threonine phosphatase family signature 64 91 IPR006186 GO:0016787
Vvi4g1340 1108 PRINTS Serine/threonine phosphatase family signature 97 121 IPR006186 GO:0016787
Vvi4g1340 1108 PRINTS Serine/threonine phosphatase family signature 134 160 IPR006186 GO:0016787
Vvi4g1340 1108 PRINTS Serine/threonine phosphatase family signature 288 304 IPR006186 GO:0016787
Vvi4g1340 1108 SUPERFAMILY EF-G C-terminal domain-like 802 877 IPR035647 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1340 K04460 - vvi:100251768 758.059