Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1345 ATGAAAGAGCTGGAAAATTTCTTTCGGGAAAGGAGCATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAATTATGGAGAGCGGTGACTAGATTGGGTGGCTATGACAAGGTGACTTCATGCAAACTGTGGCGGCAAGTGGGAGAGTCCTTTAAACCCCCAAAGACATGTACTACTGTTTCATGGACATTTCGAGGTTTTTATGAGAAGGCACTTCTGGATTATGAAAGGCATAAAACACGTGGCGGTGAGCTCAGTGTTCCTGTTTCTTCCCTGGCAGAGCCCATGAATGTTGAAAATCAGGCTTCAGGATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGGATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATTGGTTTACTTAAACGCAAGAAACCATCGAACCTTGAGCATGCTGTCAAAGCTGCACGCACCAAAGCAGCTAAACCACAATTGGACACAGCAGTTGTTGATATTGGACCCCCAGCTGATTGGGTGAAGATCAATGTGCGGAGAACTAAAGATTGTTTCGAGGTTTATGCTTTAGTTCCTGGGCTTCTGCGAGAGGAGGTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGACACTGCATGGACAATTGTTTGTCAGAGTTCCATTTGAGCAGTCAGATTAG 867 46.48 MKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELSVPVSSLAEPMNVENQASGSGRARRDAAARAMQGWHSQRLLGNGEVGDPIIKDKSSISLQKREKQLKNIGLLKRKKPSNLEHAVKAARTKAAKPQLDTAVVDIGPPADWVKINVRRTKDCFEVYALVPGLLREEVRVQSDPAGRLVITGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSD* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23633364 23642678 - Vvi4g1345 Vvi4g1345 786124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1345 288 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 1 288 - -
Vvi4g1345 288 SMART bright_3 1 86 IPR001606 GO:0003677
Vvi4g1345 288 Gene3D - 179 288 IPR008978 -
Vvi4g1345 288 Gene3D - 1 92 IPR036431 GO:0003677
Vvi4g1345 288 SUPERFAMILY HSP20-like chaperones 197 284 IPR008978 -
Vvi4g1345 288 Pfam ARID/BRIGHT DNA binding domain 1 81 IPR001606 GO:0003677
Vvi4g1345 288 ProSiteProfiles ARID domain profile. 1 85 IPR001606 GO:0003677
Vvi4g1345 288 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 1 288 IPR045147 GO:0006357
Vvi4g1345 288 SUPERFAMILY ARID-like 1 94 IPR036431 GO:0003677
Vvi4g1345 288 CDD ACD_sHsps-like 203 283 - -
Vvi4g1345 288 CDD ARID 1 81 - -
Vvi4g1345 288 Pfam Hsp20/alpha crystallin family 205 286 IPR002068 -
Vvi4g1345 288 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 188 288 IPR002068 -
Vvi4g1345 288 SMART ARID_2 1 81 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14726 PF00011 HSP20 2.90E-06 CL0190 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1345 - - vvi:100244857 577.015