Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1356 ATGGCTTCCTTGCACTATAGGTCTAGTAGAATTCTTCATCTATTTGTTGGTGTTTTTGTTGCACAACTCACCATATCTCTGTCTGCCAAGGTGTATGTAGTTTATATGGGTAGCAGAACTAGCGATGACCCGGATGAAATTCTCAGGCAAAACCACCAAATGCTTACTGCAGTTCATAAAGGAAGTACTGAGCGAGCCCAGGCCTCCCACGTTTATAGTTATAGACATGGTTTCAAAGGCTTTGCGGCGAAGTTGACGGAGCAGCAAGCTTCGGAAATGGCTAATATGCCCGGCGTGGTCTCTGTGTTTCCCAATTTAAAAAGAAGGCTGCACACCACTCATTCGTGGGATTTCATGGGTCTCGTGGGCGAAGAAACCATGGAAATTCCAGGGTATTCCACCAAGAATCAAGAAAATGTTATCATTGGTTTCATTGATACGGGTATATGGCCTGAATCCCCAAGTTTCAGTGATGACAACATGCCTTCAATACCAGCTGGATGGAATGGACAATGCCAATCAGGAGAAGCATTTAATGCATCATCTTGCAACAGGAAAGTGATTGGAGCCAGATATTATTTGAGTGGCTATGAAGCTGAAGAAGATCTGATAACGTCTGTGTCATTCAAATCCCCTAGGGACAGTTCTGGTCATGGCAGCCACACAGCCTCAACAGCTGCAGGCCGGCATGTGACAAACATGAATTATAAGGGCTTGGCAGCCGGAGGTGCTAGGGGAGGTGCTCCGATGGCAAGGATTGCAGTGTACAAGACTTGTTGGGCCTCAGGTTGCTACGATGTGGACTTACTAGCTGCCTTTGATGATGCAATTAGAGATGGCGTTCATATCTTGTCTCTGTCCCTAGGTCCTGAAGCACCTCAGGGAGATTATTTTAATGATGCCATCTCCTTGGGATCATTCCATGCTGCTAGCCATGGGGTAGTGGTAGTTGCTTCAGTTGGAAATGAAGGAAGTCAAGGTTCTGCAACAAACCTTGCTCCATGGATGATCACTGTTGCCGCTAGTTCAACAGATAGGGATTTTACATCTGATATCGTATTAGGAGATGGTGCTAATTTCACGGGTGAAAGTCTGAGTCTGTTTGAAATGAATGCCTCCACAAGCATCATCTCTGCTTCCGAAGCCTATGCAGGATACTTCACTCCCTATCAATCCAGCTACTGTTTGGAGAGTTCCTTGAATAATACCAAGACTAGAGGGAAGATTTTGGTATGCCAACATGCCGAGAGTTCAACAGATTCAAAGCTGGCAAAGAGTGCAGTAGTCAGAGAAGCTGGTGGAGTTGGGATGATTCTTATAGATGAAGCAGATAAGGATGTTGCCATTCCTTTTGTGATCCCTGCAGCTATTGTTGGAAGGGGCACAGGGGGCAGGATTCTATCCTATATTAATCATACACGAAAACCAGTTTCTAGGATTTTCCCAGCAAAGACTGTATTGGGATCTCATCCTGCTCCTCGAGTTGCAGCATTTTCTTCAAAAGGTCCCAATGCCTTAAACCCAGAAATTTTGAAGCCTGATGTCTCAGCTCCTGGATTGAATATCCTTGCAGCCTGGTCTCCAGCAATTGAGAAAATGCATTTCAACATTCTCTCTGGAACTTCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGCAACTATTTTGGATAAGAACCGCAGGTCCATCACTGTTGACCCTGAAGGAAGAAAGGGGAATGCATTTGATTATGGCTCAGGCTTCGTGAACCCCACAAGAGTCCTTGATCCTGGCCTCATCTATGATACAGAGCCAACAGATTACAAAGCGTTCCTCTGTTCAATCGGTTACTCTGAGAAGTTGCTGCATTTGATCACAAGGGACAACAGCACATGCGATCAAACTTTTGCAACTGCATCTGCACTGAACTACCCATCAATCACAGTGCCCAATCTTAAAGACAACTCCTCAGTTAGTCGAACAGTGACAAATGTTGGGAAACCAAGAAGTATTTATAAAGCAGTAGTGTCCGCTCCTACTGGAATTAATGTAACTGTTGTACCACACCGGTTAATCTTCAGCCACTATGGCCAGAAGATCAATTTCACTGTGCATCTCAAGGTGGCTGCCCCATCACACAGCTATGTGTTTGGGTTCTTGTCATGGAGGAACAAATATACACGAGTAACCAGCCCACTGGTTGTCCGCGTTGCACCTACCAGTTTAGGTAAATCTGACGTACATCACTGA 2295 45.27 MASLHYRSSRILHLFVGVFVAQLTISLSAKVYVVYMGSRTSDDPDEILRQNHQMLTAVHKGSTERAQASHVYSYRHGFKGFAAKLTEQQASEMANMPGVVSVFPNLKRRLHTTHSWDFMGLVGEETMEIPGYSTKNQENVIIGFIDTGIWPESPSFSDDNMPSIPAGWNGQCQSGEAFNASSCNRKVIGARYYLSGYEAEEDLITSVSFKSPRDSSGHGSHTASTAAGRHVTNMNYKGLAAGGARGGAPMARIAVYKTCWASGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFNDAISLGSFHAASHGVVVVASVGNEGSQGSATNLAPWMITVAASSTDRDFTSDIVLGDGANFTGESLSLFEMNASTSIISASEAYAGYFTPYQSSYCLESSLNNTKTRGKILVCQHAESSTDSKLAKSAVVREAGGVGMILIDEADKDVAIPFVIPAAIVGRGTGGRILSYINHTRKPVSRIFPAKTVLGSHPAPRVAAFSSKGPNALNPEILKPDVSAPGLNILAAWSPAIEKMHFNILSGTSMACPHVTGIVALVKAVHPSWSPSAIKSAIMTTATILDKNRRSITVDPEGRKGNAFDYGSGFVNPTRVLDPGLIYDTEPTDYKAFLCSIGYSEKLLHLITRDNSTCDQTFATASALNYPSITVPNLKDNSSVSRTVTNVGKPRSIYKAVVSAPTGINVTVVPHRLIFSHYGQKINFTVHLKVAAPSHSYVFGFLSWRNKYTRVTSPLVVRVAPTSLGKSDVHH* 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23760777 23765255 + Vvi4g1356 Vvi4g1356 786135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1356 764 Pfam Fibronectin type-III domain 657 750 IPR041469 -
Vvi4g1356 764 ProSitePatterns Serine proteases, subtilase family, serine active site. 540 550 IPR023828 -
Vvi4g1356 764 Gene3D - 627 753 - -
Vvi4g1356 764 CDD PA_subtilisin_like 351 480 - -
Vvi4g1356 764 Pfam Subtilase family 138 581 IPR000209 GO:0006508|GO:0008236
Vvi4g1356 764 Gene3D Peptidase S8/S53 domain 139 623 IPR036852 GO:0004252|GO:0006508
Vvi4g1356 764 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 20 754 IPR045051 -
Vvi4g1356 764 Pfam PA domain 383 463 IPR003137 -
Vvi4g1356 764 Gene3D - 345 487 - -
Vvi4g1356 764 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 111 IPR037045 -
Vvi4g1356 764 CDD Peptidases_S8_3 110 576 IPR034197 -
Vvi4g1356 764 SUPERFAMILY Subtilisin-like 110 614 IPR036852 GO:0004252|GO:0006508
Vvi4g1356 764 ProSiteProfiles Serine proteases, subtilase domain profile. 115 610 - -
Vvi4g1356 764 PANTHER TRIPEPTIDYL-PEPTIDASE II-RELATED 20 754 - -
Vvi4g1356 764 Pfam Peptidase inhibitor I9 31 111 IPR010259 -
Vvi4g1356 764 PRINTS Subtilisin serine protease family (S8) signature 137 156 IPR015500 -
Vvi4g1356 764 PRINTS Subtilisin serine protease family (S8) signature 214 227 IPR015500 -
Vvi4g1356 764 PRINTS Subtilisin serine protease family (S8) signature 539 555 IPR015500 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1356 - - - vvi:100246533 1487.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1356 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017213 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6