Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1358 ATGGGCATGCCGGCTTGGATAGCCTTTGCCATCATCTTGTTAAGTCGCTCGATCGCCGGAGCTCAGAAGCTGAAAACTTCCGGCTTTGAGTTGGGGCCCTTCGACAACTCCCATTATGATTCCTTGGCAGTTGTACAACCGGCTATGATCAGCAACGGAGCCCTGCAGGTGACTCCCGATTCGGCCGGTAACTTCAGCCTAGCGCACAGGTCAGGCCGAGTATTGTTCAATCGACCATTCAAGCTTTGGGAGGGAGATGGCAATGGAAGGGTGGCTTCCTTCAACTCTTCCTTCCTCATCAACATCTTTCGGTTGAATAATGATTCAGCCCCGGGCGAAGGTTTCGCCTTCATCATAGCGCCGGACCTGAACCTCCCACCTGGCAGCGACGGTGAGTACCTTGGGTTGACCAACTCCACCACCGACGGCAACCCCAACAACCACTTGATCGCCGTGGAGCTGGACACCTTCAAACAGGATTTTGATTCCAATGACAACCATATTGGCCTGGACATCAACAGCATCCGATCTAATAGAACCGTGTCCTTGTCCGACTTGGGCATCCAGATCGCCCCTTTGGATCCGAAGAATTACAGCGTATGGGTAGAGTACGACGGCGAAAACAAGGTCATGGACGTATACATGGTGGAGGAAGGGAATCCCAGGCCCGCCGAACCAGTGATGAGCGCGAAGGTTGAGTTGAGAGAGATAGTAAAGCAGTACTCGTACATGGGATTCGCGGCGTCAACAGGGAACGCGACTCAGCTCAATTGCGTGCTGCAGTGGAACCTGACTGTGGAGTTGCTGGAGGAGGACGGGGACGCCGAGTGGGTGAAGGTGGTTTTGGGTGCTGGGGTGCCGGCCATAGTAGTCGTGCTCATAGCTTGTGTGTTTTTGTGGTATTACGTCCAGAAGAAGCGGAGGGCAAAGTCGGATCCAAACATATTGGGAACCCTGAGAAGCCTGCCGGGGACGCCCAGGGAATTTGAGTTCAAGGATCTGAAGAAGGCCACAAACAACTTCGATGAGAAGCTGAAGCTGGGTGAAGGTGGCTTCGGAGTCGTGTACAAAGGACTACTGCCCAAGGAGCATGTTCATGTTGCCGTCAAGAAGTTCTCCAGAGACGTCAAGGGTAAAGACGATTTTTTGGCTGAGCTTACCATAATTAATCGCCTTCGCCACAAGCATCTTGTTCCATTACTCGGATGGTGCCACAAGAATGGAATGCTTCTTTTGGTGTATGATTACATGCCAAATGGGAGTCTGGATAAACAGCTTTTCTGCGGAAGGGAGATGCGGACGCTGGAATGGAGTGTGAGGTACAAGATCATAGCGGGGGTAGCATCAGCATTACATTATCTTCATAACGAGTACGATCAGAGACTGGAGGGAGTGCCGGGTACAATGGGTTACATTGCACCCGAGTGTTTCCATACTGGGAAGGCCACCCCAGAGTCTGACGTCTACGGGTTCGGGGCGGTCTTGCTGGAGGTGGTGTGCGCTCAGCGTCCTTGGGCCAGCGACGCTACCTTCCACTTCTTAGTGGATTGGGTGTGGTGTCTGCATCGAGAAGGGCGCATAGTTGAGGCGGTGGATGAGAGGCTGGGGAATGATTACGTGGTTGAGGAGGCTCAGAGGCTTCTGCTGCTGGGGCTGGCTTGCTCGCATCCTATAGCCACTGAGAGGCCCAAGACACAGGCCATTGTTCAGGTTTTATCGGGATCTGTATCGGTGCCCTATGTCCCGCCCTTCAAGCCCGCTTTTGTGTGGCCATCCATGGCTTCTGTTCCCACGGCTACCGATATTGACATCACGGATGATACATCCTCTCGTTTCGACTCTGGTTGGACCCCAGAGTGCATTAGCCGGGAGAGCTACGTCACTCCTATCCCATTCCCGTCCCAAAATATTTGGTTATTTCCCATCTCGTCCCAAACCCGGGACGGGACGGGGTATGCAATCACATCCCTATTATAA 1977 53.16 MGMPAWIAFAIILLSRSIAGAQKLKTSGFELGPFDNSHYDSLAVVQPAMISNGALQVTPDSAGNFSLAHRSGRVLFNRPFKLWEGDGNGRVASFNSSFLINIFRLNNDSAPGEGFAFIIAPDLNLPPGSDGEYLGLTNSTTDGNPNNHLIAVELDTFKQDFDSNDNHIGLDINSIRSNRTVSLSDLGIQIAPLDPKNYSVWVEYDGENKVMDVYMVEEGNPRPAEPVMSAKVELREIVKQYSYMGFAASTGNATQLNCVLQWNLTVELLEEDGDAEWVKVVLGAGVPAIVVVLIACVFLWYYVQKKRRAKSDPNILGTLRSLPGTPREFEFKDLKKATNNFDEKLKLGEGGFGVVYKGLLPKEHVHVAVKKFSRDVKGKDDFLAELTIINRLRHKHLVPLLGWCHKNGMLLLVYDYMPNGSLDKQLFCGREMRTLEWSVRYKIIAGVASALHYLHNEYDQRLEGVPGTMGYIAPECFHTGKATPESDVYGFGAVLLEVVCAQRPWASDATFHFLVDWVWCLHREGRIVEAVDERLGNDYVVEEAQRLLLLGLACSHPIATERPKTQAIVQVLSGSVSVPYVPPFKPAFVWPSMASVPTATDIDITDDTSSRFDSGWTPECISRESYVTPIPFPSQNIWLFPISSQTRDGTGYAITSLL* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23774950 23783516 + Vvi4g1358 Vvi4g1358 786137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1358 658 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 16 461 - -
Vvi4g1358 658 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 466 603 - -
Vvi4g1358 658 Gene3D - 26 281 - -
Vvi4g1358 658 Gene3D Phosphorylase Kinase; domain 1 326 416 - -
Vvi4g1358 658 Pfam Legume lectin domain 33 267 IPR001220 GO:0030246
Vvi4g1358 658 SUPERFAMILY Protein kinase-like (PK-like) 324 600 IPR011009 -
Vvi4g1358 658 Gene3D Transferase(Phosphotransferase) domain 1 460 586 - -
Vvi4g1358 658 ProSitePatterns Legume lectins beta-chain signature. 150 156 IPR019825 -
Vvi4g1358 658 Pfam Protein tyrosine and serine/threonine kinase 345 456 IPR001245 GO:0004672|GO:0006468
Vvi4g1358 658 Pfam Protein tyrosine and serine/threonine kinase 463 507 IPR001245 GO:0004672|GO:0006468
Vvi4g1358 658 Gene3D Transferase(Phosphotransferase) domain 1 417 459 - -
Vvi4g1358 658 CDD lectin_legume_LecRK_Arcelin_ConA 48 268 IPR001220 GO:0030246
Vvi4g1358 658 ProSiteProfiles Protein kinase domain profile. 341 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1358 658 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 273 IPR013320 -
Vvi4g1358 658 PANTHER - 466 603 - -
Vvi4g1358 658 PANTHER - 16 461 - -
Vvi4g1358 658 ProSitePatterns Protein kinases ATP-binding region signature. 347 371 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1358 - - - vvi:100251677 1249.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023713 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76603 PF00139 Lectin_legB 1.50E-60 CL0004 Vvi PK