Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1359 ATGGCACCCAGCAAGGTCAATCCTCTTTACGAGGCCTTGGGTCTCTACGACATGGCCTCCCACCAGGCTGTGGATGCATTTTGTTCTCAGTTAGATGCCTCTCCTCACCAAAGGGAGACAATAAAGATCTACGCCAAAGCAGTGCAGGAGCTGGCCATGGATATCGGGAACAAGCTGGCAGAAACCATGGGGTTAGGAGGCGATTTGTTCAAGGAATGGCCCTGCCAGTTTAGGATAAACAAATACAACTTCACTCCTGAAACTGTGGGTTCCCCGGGCGTCCAAATCCACACAGATTCCAGCTTCCTTACCATACTCCAGGACGATGAAAATGTAGGGGGCCTTGAAGTGATGGACAAGTCTGGCGCATTTGTTGCGGTGGATCCCATGCCAGGGACTCTCCTTGTCAATCTGGGAGACATTGCCACGGTGTGGAGCAACGGAAGATTGTGCAACGTGAAGCATAGGGTACAATGCAAGGAGGCAGCAGTGCGATTGTCAATTGCTTCTTTTCTGCTAGGGCCCAAGGATGCAGCAGTGGAAGCCCCGCCGGAGCTGGTGGACTCCGAACACCCTCGCCTTTTTGTTCCCGTCACCTATGAGGATTATAGAAAACTCCGCCTCTCTACCAAATTGCAGGCTGGTGAAGCTCTGGCGCTTGTGCGCGTCGACTCCTAG 678 52.8 MAPSKVNPLYEALGLYDMASHQAVDAFCSQLDASPHQRETIKIYAKAVQELAMDIGNKLAETMGLGGDLFKEWPCQFRINKYNFTPETVGSPGVQIHTDSSFLTILQDDENVGGLEVMDKSGAFVAVDPMPGTLLVNLGDIATVWSNGRLCNVKHRVQCKEAAVRLSIASFLLGPKDAAVEAPPELVDSEHPRLFVPVTYEDYRKLRLSTKLQAGEALALVRVDS* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23794824 23796668 - Vvi4g1359 Vvi4g1359 786138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1359 225 Pfam 2OG-Fe(II) oxygenase superfamily 76 172 IPR044861 -
Vvi4g1359 225 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 71 175 IPR005123 -
Vvi4g1359 225 SUPERFAMILY Clavaminate synthase-like 27 218 - -
Vvi4g1359 225 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1 221 - -
Vvi4g1359 225 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 1 221 - -
Vvi4g1359 225 Gene3D - 5 222 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1359 K23947 DAO; 2-oxoglutarate-dependent dioxygenase [EC:1.14.11.-] - vvi:100246634 452.595
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .