Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g136 ATGGAGGAAGAAATCAAAGAACCCATTTCAGTTAATCATGCCCTGCTTGGACATGCGGACTTTGCGAAGGAGATTCTACTTCAAAAGCCTGAACTTGCTGCAGAGTTAGATTATAGACGATCTTCTCCGCTTCACTTGGCCGCAGCAAAAGGGTACATTGAAATAGTAAAAGAATTGTTATTTGTAAACCCTGAGATGTGCCTTGCTTGTGATCGAGATGGGAGAAATCCAGTTCATCTAGCAGCCATGCGGGGTCATGTGCATGTCTTGAAAGAGTTAGTCCAAGCCAAACCTCATGCAACTTGGGCCGCCTTGCCGCGGGGTGAGACCATATTACATCTGTGTGTGAAACACAATCAATTGGAAGCTCTGAAGTTGTTGGTGGAAACTGCAGATGCTCATGAGATCATGAGTGCTAAGGACGACAATGGCTTCACAATCCTGCACCTAGCAGTTGCAGATAAACAACTTGAGACCATAAACTATCTACTTTCAAGTACATCCATTGAAGTAAATGCGGTGAACCTGAATGGATGCACAGCATCGGACATTCTGGCACAAAGTCGCAGAGATGTACAAGATATGGAAATCAGTGAGTTACTCCGACATGTTGGAGCTGCAAAGGCAAAGAACATATCTTTTTCTGCTTATGAATTTGGAAGCAGTAGGACAAGGGGCATGTCTTCAGATGCAGATGATCAAAACAGGGTGCCATGCCCTATAGGAAAGAACTGCAATGAGTTTAATAAGAAGAAAGATGACTGGTTGGACAAGCAGCAGTCTGCATTAATGGTTGTGGCATCACTGATTGCCACCATGGCCTTCCAAGCTGGTGTGAGCCCTCCTGGTGATGTATGGGGTGACAACTCAAAATATGATCCTGAAGGTAGCCCAGCACCGGCACCCAGTTCAGAGACTCCACACACTGCAGGGTTATCCATAATGGCTGATAATAACCCAGATGCACATACTTCTTTCCTTGTCACCAACACCATCAGTTTCCTTGCATCTCTCAGCATCATTCTATTGCTCATAAGCGGGTTGCCCATCAACCGTAGGCTTTTTGTGTGGATTTTGATGGTGATAATGTGGATTGCAGTCACAGCAATGACACTGACCTATCTGGTCTCCATAACAGCTCTCACACCCAACCATGAGCTGGATCACCTCTCTTGCATGATAACGGTTGTAGCATATGCTTGGACTTGCTTGGTGGCTCTTCTTCTTGTTGACCTCATTCTGAAGATGATAAAGAACTCTCAGGTTCAGGGGATCTGCAAACTACTTGGAATATTGTGGTTAGAATTTGGTAATGTGCTAATTATTGTACGGTAG 1335 44.79 MEEEIKEPISVNHALLGHADFAKEILLQKPELAAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRDGRNPVHLAAMRGHVHVLKELVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADAHEIMSAKDDNGFTILHLAVADKQLETINYLLSSTSIEVNAVNLNGCTASDILAQSRRDVQDMEISELLRHVGAAKAKNISFSAYEFGSSRTRGMSSDADDQNRVPCPIGKNCNEFNKKKDDWLDKQQSALMVVASLIATMAFQAGVSPPGDVWGDNSKYDPEGSPAPAPSSETPHTAGLSIMADNNPDAHTSFLVTNTISFLASLSIILLLISGLPINRRLFVWILMVIMWIAVTAMTLTYLVSITALTPNHELDHLSCMITVVAYAWTCLVALLLVDLILKMIKNSQVQGICKLLGILWLEFGNVLIIVR* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1266806 1275745 - Vvi4g136 Vvi4g136 784915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g136 444 Pfam Ankyrin repeats (3 copies) 44 132 IPR002110 GO:0005515
Vvi4g136 444 Pfam Domain of unknown function 254 379 IPR026961 -
Vvi4g136 444 ProSiteProfiles Ankyrin repeat profile. 73 95 IPR002110 GO:0005515
Vvi4g136 444 PANTHER - 14 418 - -
Vvi4g136 444 MobiDBLite consensus disorder prediction 286 314 - -
Vvi4g136 444 SUPERFAMILY Ankyrin repeat 15 205 IPR036770 -
Vvi4g136 444 Gene3D - 11 213 IPR036770 -
Vvi4g136 444 ProSiteProfiles Ankyrin repeat region circular profile. 39 60 - -
Vvi4g136 444 SMART ANK_2a 39 68 IPR002110 GO:0005515
Vvi4g136 444 SMART ANK_2a 73 102 IPR002110 GO:0005515
Vvi4g136 444 SMART ANK_2a 107 136 IPR002110 GO:0005515
Vvi4g136 444 SMART ANK_2a 143 173 IPR002110 GO:0005515
Vvi4g136 444 ProSiteProfiles Ankyrin repeat profile. 39 60 IPR002110 GO:0005515
Vvi4g136 444 ProSiteProfiles Ankyrin repeat region circular profile. 73 95 - -
Vvi4g136 444 PANTHER CASKIN 14 418 - -
Vvi4g136 444 Pfam Ankyrin repeat 143 175 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g136 - - - vvi:109122437 766.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g136 Vvi11g129 ECH
Vvi4g136 Vvi11g124 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58