Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1362 ATGTCTTGGTGCACCATTGAGTCTGATCCTGGTGTCTTTACGGAACTTATACAACAAATGCAAGTGAAAGGTGTCCAGGTTGAGGAGTTGTATTCGTTGGACCTTGATTCTCTGAACCATCTTAGGCCAGTATATGGATTGATTTTTCTTTTCAAGTGGCGTCCAGGGGAAAAGGATGACCGTCTTGTAATCAAGGACCCAAACCCTAATTTATTTTTTGCCAGTCAGGTTATTAACAACGCATGTGCAACCCAAGCAATCCTGTCTATTCTCATGAATTGTCCAGATGTTGACATTGGTCCAGAGTTGTCAATGTTAAAAGAATTCACCAAGAACTTCCCCCCTGAACTCAAAGGGTTGGCTATCAATAACAGTGAAGCCATACGAACAGCCCATAACAGTTTTGCAAGACCTGAGCCCTTTGTTCCAGAGGAGCAGAAGGCTGCTGGGAAAGATGATGATGTATACCATTTCATAAGCTATCTACCAGTTGATGGCATTCTGTATGAATTGGATGGATTGAAGGAGGGACCCATTAGCCTGGGTCAATGCCCTGGTGGACAAGGTGACTTAGATTGGGTGCGTATGGTGCAACCAGTGATTCAGGAACGCATTGAAAGATATTCCAGAAGTGAGATCAGATTTAACCTCATGGCTATCATAAAGAATAGGAAAGATATATATACTGGCGAGCTGAAAGAGCTGCAGAAGAGGAGGGAACACATTTTGCACCAGTTGGCAGCCTTACAGTCAGAGAGAATGGGTGCTACAGAGAAGATATTAATGGAGGAGGAAAAATTCAAGAAGTGGAGAACGGAAAACATCCGCAGGAAACACAACTACATTCCCTTCTTATTTAATTTTCTCAAGATTCTTGCTGAAAAGAAGCAGTTGAAACCTCTTATAGAGAAAGCCAAGCAGAAAACAAACAACAGTAGGTGA 942 42.46 MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDLDSLNHLRPVYGLIFLFKWRPGEKDDRLVIKDPNPNLFFASQVINNACATQAILSILMNCPDVDIGPELSMLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPEPFVPEEQKAAGKDDDVYHFISYLPVDGILYELDGLKEGPISLGQCPGGQGDLDWVRMVQPVIQERIERYSRSEIRFNLMAIIKNRKDIYTGELKELQKRREHILHQLAALQSERMGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTNNSR* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23835409 23843626 + Vvi4g1362 Vvi4g1362 786141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1362 313 Gene3D - 1 224 IPR036959 GO:0004843|GO:0006511
Vvi4g1362 313 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 2 310 - -
Vvi4g1362 313 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 5 22 IPR001578 GO:0004843|GO:0006511
Vvi4g1362 313 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 40 52 IPR001578 GO:0004843|GO:0006511
Vvi4g1362 313 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 76 93 IPR001578 GO:0004843|GO:0006511
Vvi4g1362 313 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 152 163 IPR001578 GO:0004843|GO:0006511
Vvi4g1362 313 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 168 178 IPR001578 GO:0004843|GO:0006511
Vvi4g1362 313 PIRSF Uch 1 313 IPR017390 GO:0004843|GO:0016579
Vvi4g1362 313 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 310 IPR001578 GO:0004843|GO:0006511
Vvi4g1362 313 Coils Coil 218 252 - -
Vvi4g1362 313 CDD Peptidase_C12_UCH37_BAP1 3 220 - -
Vvi4g1362 313 Gene3D - 225 293 - -
Vvi4g1362 313 Pfam Ubiquitin carboxyl-terminal hydrolases 257 298 IPR041507 -
Vvi4g1362 313 SUPERFAMILY Cysteine proteinases 2 223 IPR038765 -
Vvi4g1362 313 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 3 206 IPR001578 GO:0004843|GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1362 K05610 UCHL5, UCH37; ubiquitin carboxyl-terminal hydrolase L5 [EC:3.4.19.12] - vvi:100251772 613.224
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .