Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g137 ATGAAAGGCCGCTTTGATGTGCTGAAAGAGTTGGTTAGAGCCAGGCCCCATGCAGCTCGGGCCAGGGCGGAAAGGGGTGAGACCATATTGCATCTATGCGTGAAACAAAATCAGCTGGAGGCTCTGAAGTTTTTGGTGGAGACAATGGATGATCACAATGACTTAGTCAATACTAGGGATAACAATGGCTTCACCATCCTGCACTTAGCGGTTGCTGATAAACAGATCGAGACTGTAAACTATTTGCTCAGCAATACTAGAGTCGAAGTAAATGCTCTAAACACAAGTGGGCTCACAGCACTGGACATTTTAGTACATGGTCTCAGAGATGTGGGTGACTTGGACATTGGAGAGGCCTTTCGAGGCACTGGAGCCATGAGAGCAATGAACACTCATTTGCCCAATCATCATCCCCAAGTTCTGCAGCTAACCTCAGAAGGTGATCGCAGTATGAAAAGCAAAGGTAAAGAGCACTGGCTGACAAGGAAGCGGGATGCATTAATGGTGGTGGCCTCGCTCATTGCTACAATGGCGTTTCAAGCTGCAGTGAACCCTCCTGGAGGTGCGTGGCAAGACAACTCAACGCAGAATTCCCAGGATACACAAGCTGGAAAATCGCATGCAGCAGGGAAAGCTATCATGGCGGACAGCAACGAGGAATACTACCGTCTCTACCTCAGTTACAACACAACGGGTTTCATATCATCATTGAGCATAATCCTGATGCTTATCACCGGACTACCTTTCACACACCGCCTTTTCATGTGGATGCTGACTGTGGTTGTGTGGGTGGCCATCACATCCATGGCCCTCACTTACAGAACTGCAATGACCTTTCTCACACCAGACAGTGCAGAGGCAGCAGTGACTAATATAATAGTAGTCGGAGTTGCAGTGTGGTGTGGTGTGATGGCTCTTGTTCTAGTGGGGCACACGATTCGCTTATTGGTAGCTTCAATTAGAAAGTTGGGAAAACTTTGTTGGAGAGAAAGAAGACTGCAGTCAAGTTTAGTGTATGCAAACCACACCAACATATCATTTTGA 1044 47.41 MKGRFDVLKELVRARPHAARARAERGETILHLCVKQNQLEALKFLVETMDDHNDLVNTRDNNGFTILHLAVADKQIETVNYLLSNTRVEVNALNTSGLTALDILVHGLRDVGDLDIGEAFRGTGAMRAMNTHLPNHHPQVLQLTSEGDRSMKSKGKEHWLTRKRDALMVVASLIATMAFQAAVNPPGGAWQDNSTQNSQDTQAGKSHAAGKAIMADSNEEYYRLYLSYNTTGFISSLSIILMLITGLPFTHRLFMWMLTVVVWVAITSMALTYRTAMTFLTPDSAEAAVTNIIVVGVAVWCGVMALVLVGHTIRLLVASIRKLGKLCWRERRLQSSLVYANHTNISF* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1280893 1283643 - Vvi4g137 Vvi4g137 784916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g137 347 Pfam Ankyrin repeats (3 copies) 3 91 IPR002110 GO:0005515
Vvi4g137 347 MobiDBLite consensus disorder prediction 188 207 - -
Vvi4g137 347 Gene3D - 1 111 IPR036770 -
Vvi4g137 347 ProSiteProfiles Ankyrin repeat region circular profile. 62 85 - -
Vvi4g137 347 PANTHER CASKIN 4 319 - -
Vvi4g137 347 SUPERFAMILY Ankyrin repeat 3 104 IPR036770 -
Vvi4g137 347 ProSiteProfiles Ankyrin repeat profile. 62 95 IPR002110 GO:0005515
Vvi4g137 347 PANTHER - 4 319 - -
Vvi4g137 347 SMART ANK_2a 62 92 IPR002110 GO:0005515
Vvi4g137 347 SMART ANK_2a 25 54 IPR002110 GO:0005515
Vvi4g137 347 MobiDBLite consensus disorder prediction 188 205 - -
Vvi4g137 347 Pfam Domain of unknown function 158 278 IPR026961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g137 - - - vvi:100259294 669.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g137 Vvi11g127 ECH
Vvi4g137 Vvi11g118 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g137 . . . . . . . . . . . . . . Sed08g1788 . . Bhi04g01497 Tan02g1599 Cmetu03g0638 . Hepe08g1418 . Lcy13g2206 . . . . . . . . . . . . . . . . Blo18g00266 . . . . . Bma02g00544 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00846 . Chy03g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58