Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g139 ATGGACGGAGGTCCACCATACAACCCTCGTACAGTCGAGGAGGTCTTTAGGGACTTCAAGGGTCGAAGAGCTGGCATGATAAAAGCCCTCACCACTGATGTTGAAGAATTTTATCAGCAGTGCGATCCGGACAAGGAAAACCTATGCCTTTATGGATTTCCCAGTGAGCAGTGGGAAGTCAATTTACCTGCCGAAGAGGTGCCTCCAGAGCTTCCTGAGCCTGCACTAGGTATTAATTTTGCCAGAGATGGGATGCAAGAAAAGGATTGGTTATCTTTGGTCGCTGTCCACAGTGATGCATGGTTACTTGCTGTGGCCTTTTATTTTGGTGCTAGATTTGGATTTGATAAAGCTGACAGGAAACGCCTTTTTAACATGATAAATGATCTTCCAACAATATTTGAGGTTGTAACGGGAACAGCCAAGAAACAAGTTAAGGAAAAGTCATCAGTCTCAAATCACAGCAGCAACAAATCAAAATCAAACTCTAAGCGTGGCTCAGAATCTCAGGGTAAATATTCAAAGCCATTGCAAGCAAAGGATGAAGATGAGGAAGGTTTAGAGGAGGAAGAAGAAGAGGAACATGGGGAGACACTGTGTGGGGCATGTGGAGAGAATTATGCATCTGATGAGTTCTGGATCTGCTGTGATGTCTGTGAGAAATGGTTCCATGGAAAGTGTGTCAAGATCACTCCTGCAAGGGCTGAGCATATTAAGCAGTACAAATGTCCATCATGCAGCAACAAGAGAGCACGAGCGTGA 762 44.75 MDGGPPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPDKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGTAKKQVKEKSSVSNHSSNKSKSNSKRGSESQGKYSKPLQAKDEDEEGLEEEEEEEHGETLCGACGENYASDEFWICCDVCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARA* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1292382 1296907 - Vvi4g139 Vvi4g139 784918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g139 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Vvi4g139 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Vvi4g139 253 MobiDBLite consensus disorder prediction 145 174 - -
Vvi4g139 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vvi4g139 253 SMART PHD_3 199 247 IPR001965 -
Vvi4g139 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 252 - -
Vvi4g139 253 PANTHER CPG BINDING PROTEIN 4 252 IPR045104 GO:0006355|GO:0042393
Vvi4g139 253 CDD PHD_AL_plant 199 249 IPR044104 -
Vvi4g139 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Vvi4g139 253 MobiDBLite consensus disorder prediction 145 193 - -
Vvi4g139 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Vvi4g139 253 Pfam PHD-finger 200 249 IPR019787 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g139 Vvi11g125 ECH
Vvi4g139 Vvi11g114 ECH
Vvi4g139 Vvi9g122 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14727 PF12165 Alfin 5.80E-70 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g139 - - vvi:100247536 472.626