Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g144 ATGTCGGAGAAGAAGGAAACGGGCGGAGCTGAAGTTGTCGTGACGATTTCAGCTGAGAGTAAAGAGGCTAATGCCAACACAAAAGGGTCTTCGCCTATGGATTCGGAGACTTCAGCTCCAAGACGGAGCGGTCAGGGGGTGACGGAGGCGAAAACACAGCCTCACTGCCCTTCGCCGGAGATTGCTGGATTCACCGGGAGCCCGCACAAGCCTCCGAAAATCCCCACTTCGGAAGCCCTAGCTCGCCGGCGATCAGTGGCAAAATCGGTGTACTCGAGGTCTAAATCGAGATTTGGAGACCCCCCAGTTGATATCAACTATTTTGAGAATAACAATGGGATACTGCAAGAACAGATTGGTGGGTCTTCGTCTTACAGGTCTTATAGGGCGTCACCCGGTAGCAAACCCGGTAGTAGAGCAGTTTCCATCAATCAGAGAACTCCGTTGATGGCGTCTCCAGGTGGGGTTGAGGATGATGATGAGGAGATATACAAGAGAGTGAATAGTACTGAATGGAATAAGGAGAAGAACTTTTTGCTGAAGAAGAAAGTTCTGTATTTTGTTCATGGTTTGAAGAAGAGTGTTCAGGTCTTTATTTGGTTGGCCTTGATTCTTGTTACATGGGTTTTGTTGTTCGATCGAGGGGTTAAACGATCATACACTACCACCAAGATTCTGAATTCTGTGACATGGACTCTAGTTACTCTGCTCATTGGGAAACCCAGTGCTGGTCGATTGAGTTTTAGGAGTATAAAGAAAGGTAAAAAATCCAAAGAAAAAAAGTTGATTGATATGGGAGAGATTCATAGGATGAAGCGAGAAAAGGTCTCTGCTTCGGTCATGAAGGAATTGGTTGATGTGATATTGAGTTCTGGGCTTCCCACAATATCGGATACCCTTGAAAGCATTGCTAAAGAAGGTGAACAGGCGGATAAGGAGATTACTAATGAGATGGAAGCGATCGCAGCTTCATATCACATATTCAGGAATGTTTGTCAGCCTGGTTTCTCGTACATTGAGGAGGAGGACCTTTTGAGATTCATGATTAAAGAGGAGGTGGATCATGTGTTGCCACTGTTTGAAGGAATGGAGAATGGACGAATCGAAAGAAAAGTACTCACCAACTGGGTGGTGAAGGCTTACAACGACAGGAAAGCACTAGCACATGCTCTAAATGACACCAAAACAGCTGTAAAGCAATTGAACAAGGTTGTGTCAGGGGTTGTAATTGTTGTCGTCCTCATTGTGTGGCTTCTTTTGATGGAAATTGCAACTACAAAAGTTCTTGTCCTCCTCTCGTCCCAGCTTGTAGTGGCTGCTTTTATGTTTGGAAACACCTGCAAGACAATTTTTGAAGCTATCATATTTGTCTTTGTGATGCATCCATTTGATGTTGGTGACCGTTGTCTCGTTGATGGTGTCCAGTTGATAGTTGATGAGATGAACATCTTAACAACAGTCTTCTTGAAAATTGATCGCGAAAAGGTGTACTATCCAAATTCTGTTTTGGCTACCAAGCCCATCAGCAACTTCTACAGAAGCTCGCCTATGGGTGATAATGTGGAGTTCTCTATTGCATTTGCAACCACAGCAGAAAAGATCGGGGCTCTAAAAGAAAGAATAGCAAAGTACCTGGAGAGAAATCCCCAATACTGGTTTCCTGCCCACACTCTGGTAGTAAAGGAGATTGAGAATGTCAACAAGATCAAGATGACTCTATTTGTCAATCACACCATCAACTTCCAAGACTATCCAGAGAAGACTAATCGGAGAACCGAACTGGTGTTAGAGCTGAAGAAAATATTTGAAGACCTAGATATCACATACTACCTCCTGCCCCAAGAAATTCAGATCTCTAATACCACCACGCCAGCCACAATACACGGGCATGCCACCAAACATCTGTGA 1908 44.34 MSEKKETGGAEVVVTISAESKEANANTKGSSPMDSETSAPRRSGQGVTEAKTQPHCPSPEIAGFTGSPHKPPKIPTSEALARRRSVAKSVYSRSKSRFGDPPVDINYFENNNGILQEQIGGSSSYRSYRASPGSKPGSRAVSINQRTPLMASPGGVEDDDEEIYKRVNSTEWNKEKNFLLKKKVLYFVHGLKKSVQVFIWLALILVTWVLLFDRGVKRSYTTTKILNSVTWTLVTLLIGKPSAGRLSFRSIKKGKKSKEKKLIDMGEIHRMKREKVSASVMKELVDVILSSGLPTISDTLESIAKEGEQADKEITNEMEAIAASYHIFRNVCQPGFSYIEEEDLLRFMIKEEVDHVLPLFEGMENGRIERKVLTNWVVKAYNDRKALAHALNDTKTAVKQLNKVVSGVVIVVVLIVWLLLMEIATTKVLVLLSSQLVVAAFMFGNTCKTIFEAIIFVFVMHPFDVGDRCLVDGVQLIVDEMNILTTVFLKIDREKVYYPNSVLATKPISNFYRSSPMGDNVEFSIAFATTAEKIGALKERIAKYLERNPQYWFPAHTLVVKEIENVNKIKMTLFVNHTINFQDYPEKTNRRTELVLELKKIFEDLDITYYLLPQEIQISNTTTPATIHGHATKHL* 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1350184 1354369 + Vvi4g144 Vvi4g144 784923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g144 635 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 175 239 - -
Vvi4g144 635 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 240 619 - -
Vvi4g144 635 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 1 168 - -
Vvi4g144 635 SUPERFAMILY Sm-like ribonucleoproteins 452 511 IPR010920 -
Vvi4g144 635 MobiDBLite consensus disorder prediction 1 96 - -
Vvi4g144 635 PIRSF Memb_At2g17000 241 631 IPR016688 -
Vvi4g144 635 PIRSF Memb_At2g17000 173 242 IPR016688 -
Vvi4g144 635 PIRSF Memb_At2g17000 3 162 IPR016688 -
Vvi4g144 635 Pfam Mechanosensitive ion channel 402 607 IPR006685 GO:0016020|GO:0055085
Vvi4g144 635 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 240 619 IPR016688 -
Vvi4g144 635 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 175 239 IPR016688 -
Vvi4g144 635 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 1 168 IPR016688 -
Vvi4g144 635 Gene3D - 462 511 IPR023408 -
Vvi4g144 635 MobiDBLite consensus disorder prediction 19 52 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g144 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - vvi:100245659 829.706
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g144 Vvi11g106 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g144 Blo01g01450 Blo12g01027 . Bda03g00130 . . Bma04g00265 . . . Cma01g01705 . . . . . . . . . . . . . Cla05g01618 Cam05g1731 Cec05g1736 Cco05g1792 Clacu05g1720 Cmu05g1604 Cre05g1731 Cone4ag1693 . . . Lsi04g01394 . . . . . . . . Bpe04g00114 . . . Cmo01g01806 . . . Car01g01323 . . Cpe02g00286 Bhi09g03090 . . . . . . . . . . . . . . . . Cme07g00186
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47