Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g146 ATGGGTGAAGCTGTTGAATTCTACCACTCCAATGGCGTCTCCGGGATTAATCACAATGAATCCGGGAAAAAAATCGATGAAAATCACATGTGTTGCTGGTATGAAGAAGTCATTGACGATAATCTCAAGTGGTCCTTTGCCTTGAATAGTGTGCTGCATAAGGGTACAAGCCAGTACCAGGACATAGTTCTTTTGGACACAAAACACTTTGGAAAGGCCCTGGTGATTGATGGGAAGATGCAAAGTGCTGAAGTCGACGAGTTTATCTACCATGAATGCTTGATTCATCCAGCTCTCCTTTGCCACCCAAACCCAAAAACTATCTTCATAATGGGAGGTGGTGAAGGGTCTGCTGCGAGAGAAGCACTGAGGCATAATTCCATAGAAAAAGTGGTTATGTGTGATATCGACCAGGAGGTGGTTGATTTTTGCCGTAGATATCTCACAGTAAATCAAGAGGCATTCCGAAACAAGAAGCTCAATCTGGTTATCAATGATGCCAAGGCCGAGTTAGAAAGGAGGAACGAGAAATTCGACATCATTGTCGGAGATTTAGCAGACCCAGTTGAAGGAGGGCCTTGTTATCAACTCTATACAAAATCCTTCTATGAGCGAATCCTCAAGCCTAAGCTCAATGTCAATGGCATCTTTGTTACTCAAGCTGGACCTGCAGGCATTTTTACCCACAAGGAGGTCTTCTCATCCATATACAACACAATTAAGCAGGTCTTCAAGTATGTGGTTGCATATGCAGCTCATGTTCCGTCTTTTGCAGATACATGGGGTTGGGTGATGGCCTCAGACCAGCCATTCTGTATAAACGCTGAAGAAATAGACAAGAAAATCGACAAAAGAATAGACGGGGAATTGCTATATTTGAATGGTGCCTCCTTCATCTCCTCCACCACCATGAACAAGAGTGTTTCCTTATCGCTGTTGCATGAAACTCATATCTACACTGAAGAGGATGCGAGGTTCATTCATGGACACGGGGTGGCTTACCGCGATTGA 1011 44.02 MGEAVEFYHSNGVSGINHNESGKKIDENHMCCWYEEVIDDNLKWSFALNSVLHKGTSQYQDIVLLDTKHFGKALVIDGKMQSAEVDEFIYHECLIHPALLCHPNPKTIFIMGGGEGSAAREALRHNSIEKVVMCDIDQEVVDFCRRYLTVNQEAFRNKKLNLVINDAKAELERRNEKFDIIVGDLADPVEGGPCYQLYTKSFYERILKPKLNVNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKYVVAYAAHVPSFADTWGWVMASDQPFCINAEEIDKKIDKRIDGELLYLNGASFISSTTMNKSVSLSLLHETHIYTEEDARFIHGHGVAYRD* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1355370 1359837 - Vvi4g146 Vvi4g146 784925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g146 336 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 31 268 IPR030374 -
Vvi4g146 336 CDD AdoMet_MTases 112 220 - -
Vvi4g146 336 Pfam Spermidine synthase tetramerisation domain 33 84 IPR035246 -
Vvi4g146 336 Gene3D Spermidine synthase, tetramerisation domain 30 83 IPR037163 -
Vvi4g146 336 PANTHER BNAA02G04280D PROTEIN 1 335 - -
Vvi4g146 336 Pfam Spermine/spermidine synthase domain 87 266 - -
Vvi4g146 336 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 1 335 - -
Vvi4g146 336 Gene3D Vaccinia Virus protein VP39 84 335 IPR029063 -
Vvi4g146 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 30 305 IPR029063 -
Vvi4g146 336 Coils Coil 157 177 - -
Vvi4g146 336 Hamap Polyamine aminopropyltransferase [speE]. 32 314 IPR001045 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g146 K18787 ACL5; thermospermine synthase [EC:2.5.1.79] - vvi:100242399 693.345
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g146 . . . . Bpe02g01556 . . . Cmo05g00427 Cmo12g00250 . . . . . . . Bhi04g01088 . . . . . . . . . . . . . . . Cone17ag0940 Cone20ag0283 . . . . . Blo18g00262 Bda01g01344 Bda13g01302 . . Bma01g00913 . . . . . . . Car05g00351 Cpe11g00355 . . . . . . . . Cla08g00991 Cam08g1437 Cec08g1016 Cco08g1139 Clacu08g1142 . Cre08g0927 Lsi08g00836 . Chy03g01199 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002288 2 3 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 4 2 2 2 2 2 2 2 1 2 6 2 2 63