Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g150 ATGTCCGTACGTTTCAAATTCAGAAGCGCTGTGAGCTTCGACTCGGTCGACATAGAAGGTCGGCCCTCCATATCAGTTCGAGATCTCAGGTCGAAGATCGTTCGCCACAAGAATCTCGATATCTGCCATGACTTCGATCTCGTGTTCTCTGATGCCGTCACCGGTCAAGAATACGTTGATGAAAATTTTCAAATTCCAAGTGGTTCAAGTATAATTATTAAGAGAATACCTGCGGGATCAGTGCCTTCAGCAGCAAAGGCTTGCATTGATTCAATTAAGCATGTTGGGAGCAAGGACGCCAATCTTGTTCCTAAAATTGTGGAGATTGATGACTTTGATGACTTTGGGATTGACTTATGTCCCGTTCCTCAGCCATCCTTTTGTGACTCTGATCTTGATATTGATAAGATGAATTGCAGTGGTAGTGAGATCAAACCAAGTACAGTACCAAGATGCTCAAAGCCACCTGTGATAGTATGTCAAAAGCTTGAATCAAGTGACCTTAGTGAGGCTAGTCCAAGAGGTTCTACTCACAAAGTTCAAGGGAATGCTCCTCAGACAAAATCAAAACCTAAAGTTGAAGAACAGACAAAGTTAGAAAAAGTGGCTCATGCCAATCCTCAAGCCATTCAGAATGTTGATTTACCATCAGAGATGAAATGCTCTCTTTGCAACACATATTTCAAGAAGGCTGTGATGATACCATGCTGCCAGCATAGCTTTTGTGAGAAATGCATTCATCTAGTGCTGGTTGAGAAGGCACAATGTCCCAAGTGCTCTTCTACAAAATGCAGAGTAGAAGATCTGCTGCCAAATTTGTCCCTTAGGCAAGCAATAGACCATTTTCTTGAGTCTCAAATTCTGCTGAGTGGTTCTGATGATGCCTTTCATAGATATGCCCCAGATGGAGAATCTGGAATTCAAGCAAATGATTTTTCTTTTGCTGGGACTATTCTTCAAAAAGATTTGGACTTGCCTCATTCTCCCTCTGCCACAGGGAAGGGGTCCAATTATATTATGACGGAATCTGCCTATGATTCAACATCTAGAAATAATGCATCCATGGGTATTGGTGGTTCTCATAGATTTGATTCAGCTGCTGGTAAATCTTTGAAGTCAGCTCCTTTGTCACAAAAGATCAAGCAAATAGTTGGTGAGAACGATGATTTCCAAGGGGAAAACATACCTACAAATTTGTGTAAAAGTCGTGTGCCTGAGGAAGCTGATTCCACTCTGAAGAAGAAGAAGGAATTGTGGGTTAATGCATCAGGTGGAGGCCAGAGTGTTATTCCTAATAATGGTAGAAACAAAAAGGGGGACAGGGCCTGTTACACTTGTGGTTCTCCAGATCATTTAATGAGAGACTGCCCCACTGCTCTCAGTCAAAATGCTATGCTTCAAACAGGTGCCATGTTCCCTGGAGTTATGCCCGGTTTATCACCTTACTGGAATGGGACTCCATCACCGTACGGCAGGTCCTCTGTGAATATGTATGGAAACCCAGGGATGATGGCCTTCAATGCTACCATGGTTCCGGTTACACCTTTTGCCGTTCCTGCATATGTTCCATCTATGTATTGTGGTCTGCCTGTTAATGGTGGATATATGGGGATGGGAGGTTTGGCACCACCAGTAGGGACCAGTGCTGAACGGCCCTTAAGCCATCCAGAGTTTTCAGAGCTTCACGATTGTAGAAAGAAACAGAAACTTTTAAATCGCAATATGACGAGAGATGAAGATGAGGATCTGAATAAGTGGTATCGGTACAATGATGCAGAAAGGTCACATGGGCATAAACCACATATAGAAAGGGAAAAGAGTATAAGCGACTCTGAAGACAGCTCTACTCAAAGGTTAAAGAGAAAAAATCGCCATGACAAACGCTTTGATGATGACATCCACTATGGTGATGAAAGACATGAGAAGAGTTCTCGTCCCATTGTTGGAAGAGATAGGAAGCCATATCACACAGAGAGATCAAGCTTAGAAATAGATGACATGCCTTATAGCTCCAGCTGGCATAGCGAAGATAGGCATAAAAACCATCATGAAAGCTCAAAAAAACACAATGACCAAAGAGGGCAGTGCAGCAACGATTCTAGTCGCAGCCGCCATCATACCAAACACCAAAAAGATGATGAAAGAAACATAAAAAAACAGAGTGAGAAACATTACAGTCATTCACAATCTGGTTCAGAGCAAGGTTTGGCCACCCAACAAATAAAGCAGGTAAAAGAGAGAGACTCCAGGCACGGGTTGGGACATGATAGGCACAATGCAAAGTCCATGAACAACGATAATGAACATGACAGGTGGCAGATGGCCATTGGCTCAGACCACGACCACAGAGACGAGCATCCTCGTCATAAGCGGAAAAGAGTCCACTAA 2388 43.17 MSVRFKFRSAVSFDSVDIEGRPSISVRDLRSKIVRHKNLDICHDFDLVFSDAVTGQEYVDENFQIPSGSSIIIKRIPAGSVPSAAKACIDSIKHVGSKDANLVPKIVEIDDFDDFGIDLCPVPQPSFCDSDLDIDKMNCSGSEIKPSTVPRCSKPPVIVCQKLESSDLSEASPRGSTHKVQGNAPQTKSKPKVEEQTKLEKVAHANPQAIQNVDLPSEMKCSLCNTYFKKAVMIPCCQHSFCEKCIHLVLVEKAQCPKCSSTKCRVEDLLPNLSLRQAIDHFLESQILLSGSDDAFHRYAPDGESGIQANDFSFAGTILQKDLDLPHSPSATGKGSNYIMTESAYDSTSRNNASMGIGGSHRFDSAAGKSLKSAPLSQKIKQIVGENDDFQGENIPTNLCKSRVPEEADSTLKKKKELWVNASGGGQSVIPNNGRNKKGDRACYTCGSPDHLMRDCPTALSQNAMLQTGAMFPGVMPGLSPYWNGTPSPYGRSSVNMYGNPGMMAFNATMVPVTPFAVPAYVPSMYCGLPVNGGYMGMGGLAPPVGTSAERPLSHPEFSELHDCRKKQKLLNRNMTRDEDEDLNKWYRYNDAERSHGHKPHIEREKSISDSEDSSTQRLKRKNRHDKRFDDDIHYGDERHEKSSRPIVGRDRKPYHTERSSLEIDDMPYSSSWHSEDRHKNHHESSKKHNDQRGQCSNDSSRSRHHTKHQKDDERNIKKQSEKHYSHSQSGSEQGLATQQIKQVKERDSRHGLGHDRHNAKSMNNDNEHDRWQMAIGSDHDHRDEHPRHKRKRVH* 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1391338 1403082 - Vvi4g150 Vvi4g150 784929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g150 795 Pfam Zinc knuckle 441 457 IPR001878 GO:0003676|GO:0008270
Vvi4g150 795 MobiDBLite consensus disorder prediction 592 663 - -
Vvi4g150 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 288 IPR013083 -
Vvi4g150 795 SUPERFAMILY Retrovirus zinc finger-like domains 422 461 IPR036875 GO:0003676|GO:0008270
Vvi4g150 795 Pfam DWNN domain 3 77 IPR014891 GO:0008270
Vvi4g150 795 ProSiteProfiles Zinc finger RING-type profile. 221 260 IPR001841 -
Vvi4g150 795 ProSiteProfiles DWNN domain profile. 3 77 IPR014891 GO:0008270
Vvi4g150 795 MobiDBLite consensus disorder prediction 592 795 - -
Vvi4g150 795 SMART ring_2 221 259 IPR001841 -
Vvi4g150 795 Gene3D - 434 489 - -
Vvi4g150 795 MobiDBLite consensus disorder prediction 743 785 - -
Vvi4g150 795 CDD vRING-HC-C4C4_RBBP6 216 259 - -
Vvi4g150 795 Pfam Zinc finger, C3HC4 type (RING finger) 220 259 - -
Vvi4g150 795 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBBP6-LIKE ISOFORM X1 1 794 - -
Vvi4g150 795 SMART c2hcfinal6 442 458 IPR001878 GO:0003676|GO:0008270
Vvi4g150 795 SMART DWNN_2 3 77 IPR014891 GO:0008270
Vvi4g150 795 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
Vvi4g150 795 SUPERFAMILY RING/U-box 211 284 - -
Vvi4g150 795 ProSiteProfiles Zinc finger CCHC-type profile. 443 457 IPR001878 GO:0003676|GO:0008270
Vvi4g150 795 MobiDBLite consensus disorder prediction 165 190 - -
Vvi4g150 795 MobiDBLite consensus disorder prediction 670 726 - -
Vvi4g150 795 MobiDBLite consensus disorder prediction 727 742 - -
Vvi4g150 795 PANTHER RETINOBLASTOMA-BINDING PROTEIN 6 1 794 IPR033489 GO:0006397|GO:0016567|GO:0061630
Vvi4g150 795 Gene3D - 1 81 - -
Vvi4g150 795 MobiDBLite consensus disorder prediction 165 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g150 - - - vvi:100252571 1642.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g150 . . . . . . . . . Cmo12g00602 . . . Car12g00644 . Cpe07g00577 . Bhi04g01513 Tan02g1585 . . Hepe08g1435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00661 . . . . . . . . . . . Cla08g00988 . . . . . . Lsi08g00832 . Chy03g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010055 0 4 0 0 0 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 4 1 33