Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g157 ATGGAGGGTGATTCTTGTTCTTCACTTTTCTCAATCTCAACCCCCCAGAAGCAAAACCAGCACCACCATCTTCATTATCAACACCACCACCACCACCACCATCTGCCGCCGCCCCCGCCGCCGCACCAGCAGCAGAAACATGAGAGGCAGCAGCAGCAACAACAGTTCTTTCAGCTCCATCCCGTTCCATTTACCCAGCAATTGCTGCAGCAACAGCACCAGTTTGAAGTATTTCAACTGCAGCAGCAACAGCAACAGCAACAGCGGAGACTGCACCAGCAGCTAAGACTGGAAAATGAACTGGGTCGCAATGGTGGAGGAGGAGGAGAAGGTGTCGGCAATGGCGGTGGCGGCGAAGGAGGCAGCGCCTCGCTTCCTTTCTTCAATTTCAAGCTGGGTTTGAACGAGAATAGTGGTAACAGAGAGGTTGTGATGAACGAAGAAGATAAAGAGGAGGATGGTTTGATTGGTGGCAGTGAGGAACATATTCCTGGGAATAGACCTAATTCCCTAGAAATGCCCCAATGTTGTTGGCAGTCCCAAGGAGATGGTACCATTAAAGAACCTTTCTGGAAACCCCTGAATGCCCAGCTCTTCAACAAGAACGACAAGGAGACTAATGAAGATGAAGAGAAGAAGGAAGAGGGAGAGGGCAACAAGAAGATTAATCACGGACAAGTACTAGACAACGATGGAGGCAAGAACTTGGGAAACAAGTACAGATTTTTCGGTGAGCTTGAAGCAATTTGCAGCGGTGCGGGGCTTGGCGAAACGAATCAAACGGGATCGGGATCAGCTCTGACCGGTGAAAACATGACTAGGAATGCCGGGTTGCTGAGGCCTTTAGCTGATCCCCATTGCAGCAATCTCGGTGGTGCTGCTGCTGCAATTGGGGTTGATCATGGGTCAGAGACCTCAATTGGGGAAGAAGCTGCGTTGCGGAAGCTTCAGAAAAGGAAGAGGAGGAGGAAAATGAAGGAAGAGTTGAATTCCATGGCGGGTTTCTTTGAGAGCTTGGTAAAGCAGCTGATGGATCACCAAGAGGGTCTCTACAGAAAGTTCTTGGAAGTGGTTGAGAGAATAGATCAAGAGAGGATGGAGCGAGAGGAAGCATGGAGGAGCAAACAACTCGAGAACTTTAACCGAGAAGCCGCCGCAAGAGCCCATGAACAAACTCTAGCTTCAAGTAGAGAGGTTGCGGTTGTCTCATACTTAGAAAAAATCACAGGCCAAAGCATCGATCTTCCCAATAAGAACAACACCCAATTACACTCTCAACGTTATCTTCCAAAGGAACCCGTGAAAATCAACAACTTCAGCAGCAGTAACACAAACAGCAGATGGCCTAAAGCTGAAGTCCAAGCACTGATTCAAGTCAGAAGTAGATTAGAATCGAGGTTTCAGGAGCCAGGCCTAAAAGGGCCTCTGTGGGAAGAAATAAGCTCTTCAATGACTTCAATGGGTTATCAGAGAAGCGCCAAAAGATCTTTTTTATTTTATTTATTTCAATTTTTAGCAATTATTATTCATTTTTTTAACTAG 1542 47.28 MEGDSCSSLFSISTPQKQNQHHHLHYQHHHHHHHLPPPPPPHQQQKHERQQQQQQFFQLHPVPFTQQLLQQQHQFEVFQLQQQQQQQQRRLHQQLRLENELGRNGGGGGEGVGNGGGGEGGSASLPFFNFKLGLNENSGNREVVMNEEDKEEDGLIGGSEEHIPGNRPNSLEMPQCCWQSQGDGTIKEPFWKPLNAQLFNKNDKETNEDEEKKEEGEGNKKINHGQVLDNDGGKNLGNKYRFFGELEAICSGAGLGETNQTGSGSALTGENMTRNAGLLRPLADPHCSNLGGAAAAIGVDHGSETSIGEEAALRKLQKRKRRRKMKEELNSMAGFFESLVKQLMDHQEGLYRKFLEVVERIDQERMEREEAWRSKQLENFNREAAARAHEQTLASSREVAVVSYLEKITGQSIDLPNKNNTQLHSQRYLPKEPVKINNFSSSNTNSRWPKAEVQALIQVRSRLESRFQEPGLKGPLWEEISSSMTSMGYQRSAKRSFLFYLFQFLAIIIHFFN* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1473562 1476022 - Vvi4g157 Vvi4g157 784936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g157 513 MobiDBLite consensus disorder prediction 1 20 - -
Vvi4g157 513 Gene3D - 448 496 - -
Vvi4g157 513 MobiDBLite consensus disorder prediction 100 119 - -
Vvi4g157 513 PANTHER - 56 495 - -
Vvi4g157 513 MobiDBLite consensus disorder prediction 1 54 - -
Vvi4g157 513 MobiDBLite consensus disorder prediction 21 37 - -
Vvi4g157 513 CDD GT1 447 495 - -
Vvi4g157 513 MobiDBLite consensus disorder prediction 202 224 - -
Vvi4g157 513 MobiDBLite consensus disorder prediction 198 231 - -
Vvi4g157 513 Pfam Myb/SANT-like DNA-binding domain 446 494 IPR044822 -
Vvi4g157 513 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 56 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g157 - - - vvi:100256096 741.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1858 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071625 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14733 PF13837 Myb_DNA-bind_4 7.50E-08 CL0123 Vvi TF