Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g161 ATGGTCGTCGGCAGCGGCGGTGGCGGTGGCGGTGGAGGTGGTGACCAGTGGCAGCTTGGGGTGGGGGGTTGGAGGCAGTTTGATCAGTTTGCGTCGACTAGCGGACAAGGGATTGGGGACAACAGCGAGGCGTTTTTTCCTGAGAAATGTGATCGGCCGGAAGGGTCGGAGAGGGATGACTGCGATTCTGATGATCGCGATTCTTGGGATGTGCACCATAAGCGGGCCAAAGTTCATTCGTATTCCCAGGGTTGCACTTATGCAATAACTGCTATGCCTTTGGAAGCTGGAAATTCTAGTTCGTCCACAGACAGGGATTATAATGTCAGTCAGAGTCCAATTCCTTTTAATAATGAGATCCTGCGTCTCACCTCAATGTCGAATGATAGTGATGATGAGAATCCACTTGATTCTAATGATGGGAGAGATGAGGAAGGAGATGGATTTAGTACTTCAAAAATGGAAGATTTAGAAGTTCGGATGGATCTTACAGATGACTTATTGCACATGGTTTTCTCTTTCTTGGACCATATTAATCTTTGTCGAGCTGCTATAGTCTGCAAGCAGTGGCGAGCTGGTAGTTCTCATGAAGACTTCTGGAGGTGTCTGAATTTTGAAAATCGGAACATATCTGAAGAACAGTTTGAGGATATGTGTCGTCGATATCCGAATGCCACTGAAGTGAATATTTTTGGTGCTCCTTCAATTCACTCGCTGGTTATGACAGCAATGTCTTCTTTAAGAAATCTGGAGACCTTAACCTTGGGGAAAGGAACATTAGGGGATACATTTTTCCAAGCCTTGGCTGATTGTTATATGTTGAAGAGACTGCTTGTTAATGATGCCACTCTTGGTAATGGTATCCAGGAGATACCGATATACCATGATAGATTGCATCATCTTCAAATTACAAAATGTCGTGTACTCCGTATATCTGTCAGGTGCCCCCAGCTTGAAACCTTGTCTCTGAAGCGCAGCAGTATGGCACATGCTGTGCTTAATTGCCCTCTTTTGCATGACCTTGATATAGGCTCTTGCCACAAGCTTACAGATGCTGCAATTCGCTCAGCAGCAACATCATGCCCTCTATTGGAATCTTTGGATATGTCTAATTGTTCATGTGTTAGTGATGATACCCTTCGTGAAATAGCCCTCACTTGTGCTAATCTTCATATTCTTGATGCATCATACTGCCCAAACATCTCACTGGAGTCTGTAAGGCTGTCAATGTTGACAGTTCTTAAGCTTCACAGTTGTGAGGGCATAACCTCAGCTTCCATGGCTGCAATATCGCACAGTTATATGTTGGAGGTTTTGGAGCTTGATAATTGCAGCTTATTGACTTCAGTGTCCCTGGAACTTCCTCGTTTGCAAAATATTAGACTAGTGCATTGTCGCAAGTTTGTTGATTTAAATTTACGAAGTATCATGTTGTCATCTATGACTGTGTCCAATTGTCCTGCACTCCACCGAATCAATGTCACTTCAAATTCACTTCAGAAATTAGTGTTGCAAAAGCAAGCAAGTTTAACTACATTAGCTCTGCAATGCCAATATTTGCAAGAAGTGGACCTCACAGATTGTGAATCTCTCACAAACTCCATTTGTGACGTTTTTAGTGATGATGGTGGATGCCCTATGCTAAAATCATTAGTTCTAGATAACTGCGAGTGCTTGACAGCAGTGGGATTCCGCAGTACCTCCTTAGTCAGTCTTTCACTGGTTGGTTGTCGTGCCATTACTTCTCTTGAACTCGTATGCCCCTATCTTGAGCAAGTTCATTTAGATGGTTGTGATCATCTTGAAAGAGCATCATTTCGCCCTGTTGGGCTTCGGTCATTGAACTTGGGAATTTGTCCCAAATTGAGTGCACTCCACATTGAAGCACCATCCATGGTTCAACTTGAGTTGAAAGGATGCGGTGGACTATCTGAAGCATCCATTAACTGTCCTATGTTGACGTCTCTAGATGCTTCCTTTTGCAGCAAACTCAAGGATGATTGCTTGTCTGCAACAGCTGCTTCATGCCCTTTCATTGAGTCGTTGATACTGATGTCTTGCCCATCTGTGGGTTATGAAGGACTCTCCTCTTTGCGCTTGCTGCCGCATTTAACCTTGCTTGATCTGTCATACACTTTTTTGATGAACTTGCAGCCAGTTTTTGAATCCTGCTTGCAGCTAAAGGTACTGAAATTACAAGCATGCAAGTATCTCACTGACTCATCACTGGAAGCTCTTTATAAAGAAGGTGCTCTCCCAGCTCTATGCGAGCTGGACTTATCATATGGGGCCCTCTGTCAGTCGGCTATCGAGGAGCTTCTTGCTTGTTGTACACATCTCACTCATGTGAGCTTGAATGGCTGCCTAAATATGCACGATCTGAATTGGGGTTTTAGCAGTGGTCCCATTTCTGAGTTGCCAAGCATTTATAACACATCTAGCTTGTCTTCTCACGGGGATGACCATGAGCTAATTGAGCAGCCTAATCGCTTACTGCAGAATCTTAACTGTGTTGGATGTCAGAATATTAAGAAAGTTCTCATTCCACCAATGGCACGCTGTACCCATTTGTCATCATTAAACCTCTCTCTTTCTGCAAATTTGAAGGAAGTTGATGTTGCTTGTTACAATCTTTGCTTTCTTAATTTGAGCAATTGCTCCTCCTTGGAAATTTTAAAGCTCGAGTGTCCGAGGTTAACCAGCCTCTTTCTTCAGTCTTGCAACATCACGGTAGAAGCAGTAGAAGCTGCCATATCTCAGTGCAACATGCTGGAGACCCTTGATATCCGCTTTTGTCCGAAGTTGTCCAATGCGAGTATGAAAACATTACGAGCAGTGTGCCCCAGTTTGAAGCGCATCTTCAGCAGCCTGTGA 2874 43.95 MVVGSGGGGGGGGGDQWQLGVGGWRQFDQFASTSGQGIGDNSEAFFPEKCDRPEGSERDDCDSDDRDSWDVHHKRAKVHSYSQGCTYAITAMPLEAGNSSSSTDRDYNVSQSPIPFNNEILRLTSMSNDSDDENPLDSNDGRDEEGDGFSTSKMEDLEVRMDLTDDLLHMVFSFLDHINLCRAAIVCKQWRAGSSHEDFWRCLNFENRNISEEQFEDMCRRYPNATEVNIFGAPSIHSLVMTAMSSLRNLETLTLGKGTLGDTFFQALADCYMLKRLLVNDATLGNGIQEIPIYHDRLHHLQITKCRVLRISVRCPQLETLSLKRSSMAHAVLNCPLLHDLDIGSCHKLTDAAIRSAATSCPLLESLDMSNCSCVSDDTLREIALTCANLHILDASYCPNISLESVRLSMLTVLKLHSCEGITSASMAAISHSYMLEVLELDNCSLLTSVSLELPRLQNIRLVHCRKFVDLNLRSIMLSSMTVSNCPALHRINVTSNSLQKLVLQKQASLTTLALQCQYLQEVDLTDCESLTNSICDVFSDDGGCPMLKSLVLDNCECLTAVGFRSTSLVSLSLVGCRAITSLELVCPYLEQVHLDGCDHLERASFRPVGLRSLNLGICPKLSALHIEAPSMVQLELKGCGGLSEASINCPMLTSLDASFCSKLKDDCLSATAASCPFIESLILMSCPSVGYEGLSSLRLLPHLTLLDLSYTFLMNLQPVFESCLQLKVLKLQACKYLTDSSLEALYKEGALPALCELDLSYGALCQSAIEELLACCTHLTHVSLNGCLNMHDLNWGFSSGPISELPSIYNTSSLSSHGDDHELIEQPNRLLQNLNCVGCQNIKKVLIPPMARCTHLSSLNLSLSANLKEVDVACYNLCFLNLSNCSSLEILKLECPRLTSLFLQSCNITVEAVEAAISQCNMLETLDIRFCPKLSNASMKTLRAVCPSLKRIFSSL* 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1514830 1524551 + Vvi4g161 Vvi4g161 784940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g161 957 MobiDBLite consensus disorder prediction 126 153 - -
Vvi4g161 957 PANTHER OS10G0396666 PROTEIN 68 921 - -
Vvi4g161 957 MobiDBLite consensus disorder prediction 1 20 - -
Vvi4g161 957 Pfam F-box-like 165 204 IPR001810 GO:0005515
Vvi4g161 957 Gene3D Ribonuclease Inhibitor 642 716 IPR032675 -
Vvi4g161 957 Gene3D Ribonuclease Inhibitor 406 482 IPR032675 -
Vvi4g161 957 SUPERFAMILY F-box domain 162 192 IPR036047 GO:0005515
Vvi4g161 957 SMART fbox_2 163 203 IPR001810 GO:0005515
Vvi4g161 957 MobiDBLite consensus disorder prediction 45 59 - -
Vvi4g161 957 SMART LRR_CC_2 335 360 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 454 479 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 361 386 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 724 749 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 517 541 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 587 612 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 921 946 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 896 920 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 676 701 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 247 271 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 545 572 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 408 433 IPR006553 -
Vvi4g161 957 SMART LRR_CC_2 650 675 IPR006553 -
Vvi4g161 957 MobiDBLite consensus disorder prediction 31 69 - -
Vvi4g161 957 Gene3D Ribonuclease Inhibitor 810 956 IPR032675 -
Vvi4g161 957 Gene3D Ribonuclease Inhibitor 155 405 IPR032675 -
Vvi4g161 957 SUPERFAMILY RNI-like 716 953 - -
Vvi4g161 957 SUPERFAMILY RNI-like 184 403 - -
Vvi4g161 957 Gene3D Ribonuclease Inhibitor 717 809 IPR032675 -
Vvi4g161 957 Gene3D Ribonuclease Inhibitor 483 609 IPR032675 -
Vvi4g161 957 SUPERFAMILY RNI-like 443 741 - -
Vvi4g161 957 PANTHER OS10G0396666 PROTEIN 68 921 IPR044703 GO:0010252|GO:1905393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g161 - - - vvi:100262977 1852.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42