Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g163 ATGGCGACTACTCTATGGATTCTCTCGCTCTCGCTCTCCCTCTCCCTCTCCCTCGTCTTCCTCTCTGTTTCTGCTGATACTCACAAAAGTGTAACTGATAACCCCGCTGATGAGCTGGTTGCCACACTAAACAATAACAGGACTGCACACAAGGAATCAGCCCTTTACGACAATCCAGGCCTGGCTTGCATTGCTCTACAATACATAAAAGCATACCAAGGCAGTTGTGGTGAAGTGGGGGGTGAGGATGCCAAGAAGCCTGCAGAATCTCAATTTGCTGAAACTTTTGCTCCCAACTGTGGTGTGCAGGTCTCAACCCTCACCCAAATCACTGGCCGTTTACTTGGCTGCGAGACCAAATATGTCAGCCCCGCTGAAGCTTTCTCAGAAATTCTAATGAAAAACAGTAAGAGCTTGGAAATTCTTTACAGTAAGAACCACACAGAGTTAGGAGCTGCAGTGAGTGGCTCTGATGGTGGAGCTCCCTACTTCTGGTGTGTGCTGTTCAGCAATGGCAAAAGCAATAGCAGCTTTGTTTTGGATGGAGGCGTAGCAAAGATATCGAAACCTGGGTGCTTCAGCGGTGCCAATGATCAGTGCAGCAGTGCAGACGATTGGTCACAAACCCGGTTTCATGGAGGGGAGAAGAAGAGGGGGTTTGGGGATGGTGGTCGGAGTTGGAATGACGAGAATGGTGGTGGTTTTTATTTTGATCATCATGATTTGAGTGCGAAAAGGGCTAGGGTTTTTGGTTTGGGAGATGGAGTCGAAGAAGAGGAGGGAGTTGAGAATTTGGGAGGGGGTGGAGTGGGAATTGAAGAGAGAGAATGGGGAATTGGGGCGATGGTTGTGGACGAGGACTTAGAGGGAAACAAGGAGTGGGGACTTGATCTTAATATTTTTCCTACTGGGACGAGTGCGATTGACACATTTTTTCGACATGAGACTCGGTTTGGAAAGGGGATTGCCGAGGAAAGAGAAGAATTGCCGGGATCGAATTGGGTTGAGATTGAGGAAGGTGTGGGTTTTAGATACACAAGGGAAGAGAAGGGAAAAGGAAAAGCTGTTGATCATCCAATGTTAAATGCCAATAGGCAAAAGGAAAAAGAAATATGGTTTGGTAATGGGGTGAGTATTGGAAGAACTGAAAATGAGGGAGGAAAGAATGATATGGGCGGAGTAGTTGCTGAGGATTTCGTAATGATGCCACCTGAGCCAATGGGACTCGATTCTGAAGCCCACAAGGGCATGGTTTCCGGTATTAGTGAGCTGAAGGACTTTAACCAAAGTAGAGAAAATACGGAGCCAACAGATACTTTGATGTCATTGAGGCAAAGGGCATTGTTTGTGGCCATTGCAAATGCAGCAAAAAGAAGGGAGAATGCAGTGAGGTACCGTCAAATAGCTAGAAGATCTGTGCCACAGCTAGCACATTTTGATCCTGAGGAAGCGGAGCGCTATGCTGTGTATATTAGCAAGAAAGCGCAAAAGCCATCTGTTAACAAGAAGGCTGAAGATTTTGAGGGTCCCTTCTATGAGGCAATGGAGATGATCAACAAACGAAAATTGGTTGCTGAAAAGAACTCCACGCCGCTGATTGGATGGGTGCCCTCAACTCAGGGCCATACTATCACAAAGCGCTTAGTTCCTTCTCTTGTGGATGTATCTGTGGATGCCCTTGCCAAAAATTCTGATGCAATAGTTTCACTTGAACTTATCCCAGATGTGCTGAGGCACAAAATTAGTCGAGCCATTTGTAGAGGTCGGAGAATGAATGCTCATTTCATGGAACTTCTTCTGAGGGGGTCTCCGACTGAGATACGTCTAGATGACTGTTCATGGATGACTGAAGAACAGTTCACCAATCTCTTTAGACGCTGCAAGACTAAGAACTTGACTGTGATACAACTTGATCTATGTGGGCGATGCATGACTCTCAGCACATTGCTAGGCACCATAGCTCGGTCTTCAAATTGTCTGCCTGCTTTATCTACAATGTCTCTGAGGGGTGCATGTCGGTTATTGAATGAAGGGATAGGTGTACTTGTTACATCAGCGCGTAGACTGCAGTCTCTAAATTTGGGCCAGTGCTCTCTTCTCACCCATTCTTCCATCAATGTTGTGGCTGAAGTGTTGGGACATACATTGAAGGAGCTATTTATAGATGATTGCCAAAACATCAATGCAATGCTTATCTTGCCTGCTTTGAAACGGTTGGAATGTTTAGAAGTATTGTCAGTTGCAGGCATTCAGACAGTCTGTGATGATTTTATTTCTGAAATAGTCACTGCTCTTGGTTCAAATATGAAGGAACTTGTATTGGCCAATTGCTTCAAAATAACCGATGATTCATTGGAAGCAATAGGACGCACTTGTTCCAGTCTCTCTGCCATTGACCTTTCCAACTTGGATCTATTGACAGACTCAGCACTACATTATCTCACCAATGGTTGTCGGTCAATCCAAACACTTAGACTTTGCCGGAACAACTTCAGTGATGAAGCTATAGCCGCATTCTTGGAAACTTCTGGACAGTCTCTGAAACATCTCTCTCTGAATCATTCCAGTAAGGTTGGGGACAGCACCGCTGTGTCTCTTACCAAGTGTTGGAGAACTCTATTGACTTTGGATTTATCTTGGTGTCGAAATTTAAAAGATGAGGCATTTGGGCTGATTGTGGACAGCTGCTCGTCACTGAGGTTGCTTAAGCTCTTTGGATGTACACAGATTACCCATAGATTTGTCCATGGCCACTCAAACGCTCGTGTTCAGATCATTGGATTAAGTGGGCCTAATAAGGTCTTGGGACACCTTGACCTCATTGAACCTCAACAATCTCCATTGCGCTATTCCCCAGTGACAAATAGACCCTGA 2874 45.44 MATTLWILSLSLSLSLSLVFLSVSADTHKSVTDNPADELVATLNNNRTAHKESALYDNPGLACIALQYIKAYQGSCGEVGGEDAKKPAESQFAETFAPNCGVQVSTLTQITGRLLGCETKYVSPAEAFSEILMKNSKSLEILYSKNHTELGAAVSGSDGGAPYFWCVLFSNGKSNSSFVLDGGVAKISKPGCFSGANDQCSSADDWSQTRFHGGEKKRGFGDGGRSWNDENGGGFYFDHHDLSAKRARVFGLGDGVEEEEGVENLGGGGVGIEEREWGIGAMVVDEDLEGNKEWGLDLNIFPTGTSAIDTFFRHETRFGKGIAEEREELPGSNWVEIEEGVGFRYTREEKGKGKAVDHPMLNANRQKEKEIWFGNGVSIGRTENEGGKNDMGGVVAEDFVMMPPEPMGLDSEAHKGMVSGISELKDFNQSRENTEPTDTLMSLRQRALFVAIANAAKRRENAVRYRQIARRSVPQLAHFDPEEAERYAVYISKKAQKPSVNKKAEDFEGPFYEAMEMINKRKLVAEKNSTPLIGWVPSTQGHTITKRLVPSLVDVSVDALAKNSDAIVSLELIPDVLRHKISRAICRGRRMNAHFMELLLRGSPTEIRLDDCSWMTEEQFTNLFRRCKTKNLTVIQLDLCGRCMTLSTLLGTIARSSNCLPALSTMSLRGACRLLNEGIGVLVTSARRLQSLNLGQCSLLTHSSINVVAEVLGHTLKELFIDDCQNINAMLILPALKRLECLEVLSVAGIQTVCDDFISEIVTALGSNMKELVLANCFKITDDSLEAIGRTCSSLSAIDLSNLDLLTDSALHYLTNGCRSIQTLRLCRNNFSDEAIAAFLETSGQSLKHLSLNHSSKVGDSTAVSLTKCWRTLLTLDLSWCRNLKDEAFGLIVDSCSSLRLLKLFGCTQITHRFVHGHSNARVQIIGLSGPNKVLGHLDLIEPQQSPLRYSPVTNRP* 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1529077 1552457 + Vvi4g163 Vvi4g163 784942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g163 957 MobiDBLite consensus disorder prediction 209 224 - -
Vvi4g163 957 SMART LRR_CC_2 792 817 IPR006553 -
Vvi4g163 957 SMART LRR_CC_2 766 791 IPR006553 -
Vvi4g163 957 SMART LRR_CC_2 818 842 IPR006553 -
Vvi4g163 957 SMART LRR_CC_2 870 895 IPR006553 -
Vvi4g163 957 SMART LRR_CC_2 844 869 IPR006553 -
Vvi4g163 957 SMART LRR_CC_2 686 711 IPR006553 -
Vvi4g163 957 SUPERFAMILY RNI-like 606 924 - -
Vvi4g163 957 PANTHER F-BOX/LRR PROTEIN 441 951 - -
Vvi4g163 957 PANTHER UNCHARACTERIZED 441 951 - -
Vvi4g163 957 MobiDBLite consensus disorder prediction 204 224 - -
Vvi4g163 957 Gene3D Ribonuclease Inhibitor 764 839 IPR032675 -
Vvi4g163 957 Gene3D Ribonuclease Inhibitor 556 763 IPR032675 -
Vvi4g163 957 Gene3D Ribonuclease Inhibitor 840 942 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g163 K15082 RAD7; DNA repair protein RAD7 - vvi:100252702 1441.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g163 Vvi11g85 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g163 . . . . Bpe02g01560 . . . . . . . Car09g00314 . . . . . . . . . . . Cla05g01627 Cam05g1736 Cec05g1744 Cco05g1801 Clacu05g1727 Cmu05g1612 Cre05g1740 . . . . Lsi04g01386 . . . . . Bda01g01347 . . . . . Sed05g1795 . Cmo09g00363 Cma09g00364 . . . . . Bhi09g03082 Tan01g3472 Cmetu07g0807 . . Mch11g0452 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014132 1 1 1 0 1 0 1 0 0 1 1 1 0 0 1 1 0 2 0 1 1 1 0 1 1 1 1 2 1 1 23