Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g165 ATGACTTCGGATCTGCTTCGGATCTCTCTTTATCCTCCTCGGAACCTCTGTTTCAGCTACGATTCAAAGTCTAATGTTCATGGATTCAGCTTCAGTTCTCTTCCACAACGACGCCGTTCGCAGCGTCTCTGGAAAGTCTCCGGTAGAAGAGCGCCTAATTTTAATTTTATTTTCTCGAAGGCCATTGATATTAGAGCTCCGGTGAAAAGCACGCCTTTGACGGAGGAGCAACGGCCGCGGGGCGACTCGCCGTTGCTTCTCGATGTCACTGGGATGGTGTGCGGAGCCTGCGTTGCGCGAGTCAAATCTGTGCTGTCCGCCGATGAGCGTGTCGAATCGGCGGTGGTCAACATGCTGACGGAGACGGCGGCGGTCCGGATAAGGCCGGAGGTTGTGGAGGAGACCGTGGGGGAGAGCTTAGCGAGGAGATTGACAGAGTGTGGATTTCCGACGAAGGAGAGGGTTTCGGGGACGGGAGTTGAGGAGAATGTAAAGAAGTGGAGGGAGATGGGGGAGAAGAAGGAGGCGTTGCTTGTGAAGAGTCGGAATCGGGTGGCTGTTGCTTGGACTTTGGTGGCGTTGTGCTGTGGATCGCATGCTTCGCACATTTTGCATTCTCTCGGGATTCATGTTGATCATGGGTCATTTTGGGAGCTACTTCATAATTCATATGTGAAAGGTGGATTGGCTTTGGGTGCTCTCCTGGGACCCGGACGAGAGCTACTTTTTGATGGTCTGAGGGCATTCTCAAAGGGATCACCAAATATGAATTCTCTTGTAGGATTTGGATCTGTTGCTGCATTTGGCATAAGTATGGTCTCACTTTTTAACCCCGGGCTTCAATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTTGTGCTCCTTGGACGTTCTCTTGAAGAGAAGGCGAGGATCAGGGCATCTAGCGATATGAATAAACTTTTATCACTGATATCCACTCGGTCACGGCTTGTGATTACTTCCTCAGAAAGTGACTCCTCTACTAATAGTATACTTTGCTCTGATGCAATGTGCATTGAAGTCCCAACTGATGATATTCGAGTTGGGGACTCAGTGTTGGTTTTGCCTGGAGAAACAATACCTGTAGATGGAAGAGTTCTTGCTGGAAGAAGTGTTGTGGACGAGTCCATGCTTACAGGAGAATCACTTCCTGTATTTAAGGAAGAGGGTTTTGTGGTCTCTGCTGGAACAATAAACTGGGGTGGTCCTTTAAGGATTGAAGCCTCTTCAAACGGCTCCAACTCCACAATATCTAAGATTGTTTCCATGGTTGAGGATGCTCAAGGCCGTGCAGCACCCATACAAAGGCTTGCAGATTCAATTGCTGGACCATTTGTCTATATTGTGATGACTTTATCAGCAGCAACTTTTACCTTTTGGTACTACCTAGGCACACACATCTTTCCAGATGTATTGTTCAATGATATTGCTGGACCAGATGGAAATCCTTTGCTTTTGAGCTTGAAACTTTCTGTGGATGTTTTGGTGGTCTCCTGTCCATGCGCACTGGGGCTTGCCACACCTACTGCAATCTTAGTTGGCACCTCTCTTGGAGCTAAACAAGGACTTCTTATAAGAGGAGGAGACGTACTAGAACGTTTGGCCAGTGTTGACCATGTGGCTTTTGACAAGACTGGAACTCTTACAAAAGGAAAACCAGCTGTTTCTGCTGTGGCATCTTTGGCTTATGAAGAACAAGAAATTCTCCGCATTGCTGCTGCTGTGGAGAAAACAGCAGTGCATCCAATTGCAAAGGCTATTGTAAATAAAGCAGAATCGTTGAATTTGACCATCCCAATCACAACAGCGCAATTAGTAGAACCAGGTTTCGGCTCCTTGGCAGAAGTAGATGGGCGTTTGGTCGCTGTGGGTTCATTGGAATGGGTTCAAGATCGTTTTCAAAGGAGAACAAACCACTCTGATCTAATGAATTTAGAAAATGCCATGATGCATCATTTATCAAATGAAGTATCTTTGTCAAACCATTCCCGAACGGTTGTTTATGTTGGACGTGAAGGAGACGGTGTGATTGGTGCTATTGCAGTATGTGACAGTTTACGCCATGACGCCAACTCTGCTGTAACCAGGCTTCAGGAGAAAGGAATCAAAACCATCCTCTTGTCAGGGGACAGGGAAGAGGCAGTTGCAACTATAGCAAAGACTGTTGGAATAGAAAGTGAATTTATAAATTCATCCTTGACTCCTCAGCAGAAATCTGGTGTCATAAAATCTCTCCAAACTGCAGGACATCGTGTTGCAATGGTAGGTGATGGCATAAATGATGCACCCTCTTTAGCTCTTGCCGATGTTGGGATAGCTTTGCAAGTTGAATCACAGCAAAGCGCAGCATCTGATGCAGCATCCATTATACTTCTTGGAAATAAAATCTCACAAGTGGCAGATGCATTAGATCTCGCACAAGCCACAATGGCAAAAGTCTATCAAAATTTGTCATGGGCAGTCGCATATAATGTGGTCGCAGTCCCCATTGCTGCCGGGGTACTACTTCCCCGTTTTGATCTTGCCATGACGCCTTCCCTTGCAGGTGGGTTGATGGCTCTGAGCTCAATATTCGTAGTGACCAACTCGGTGCTTCTGCAGCTTCATGGGTCTGACAAGAACAGGAAAAGCTAG 2667 46.79 MTSDLLRISLYPPRNLCFSYDSKSNVHGFSFSSLPQRRRSQRLWKVSGRRAPNFNFIFSKAIDIRAPVKSTPLTEEQRPRGDSPLLLDVTGMVCGACVARVKSVLSADERVESAVVNMLTETAAVRIRPEVVEETVGESLARRLTECGFPTKERVSGTGVEENVKKWREMGEKKEALLVKSRNRVAVAWTLVALCCGSHASHILHSLGIHVDHGSFWELLHNSYVKGGLALGALLGPGRELLFDGLRAFSKGSPNMNSLVGFGSVAAFGISMVSLFNPGLQWDASFFDEPVMLLGFVLLGRSLEEKARIRASSDMNKLLSLISTRSRLVITSSESDSSTNSILCSDAMCIEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLTGESLPVFKEEGFVVSAGTINWGGPLRIEASSNGSNSTISKIVSMVEDAQGRAAPIQRLADSIAGPFVYIVMTLSAATFTFWYYLGTHIFPDVLFNDIAGPDGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLASVDHVAFDKTGTLTKGKPAVSAVASLAYEEQEILRIAAAVEKTAVHPIAKAIVNKAESLNLTIPITTAQLVEPGFGSLAEVDGRLVAVGSLEWVQDRFQRRTNHSDLMNLENAMMHHLSNEVSLSNHSRTVVYVGREGDGVIGAIAVCDSLRHDANSAVTRLQEKGIKTILLSGDREEAVATIAKTVGIESEFINSSLTPQQKSGVIKSLQTAGHRVAMVGDGINDAPSLALADVGIALQVESQQSAASDAASIILLGNKISQVADALDLAQATMAKVYQNLSWAVAYNVVAVPIAAGVLLPRFDLAMTPSLAGGLMALSSIFVVTNSVLLQLHGSDKNRKS* 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1557586 1570570 + Vvi4g165 Vvi4g165 784944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g165 888 SUPERFAMILY Calcium ATPase, transmembrane domain M 288 546 IPR023298 -
Vvi4g165 888 Pfam E1-E2 ATPase 345 532 - -
Vvi4g165 888 Gene3D - 83 154 - -
Vvi4g165 888 PRINTS P-type cation-transporting ATPase superfamily signature 385 399 - -
Vvi4g165 888 PRINTS P-type cation-transporting ATPase superfamily signature 552 566 - -
Vvi4g165 888 PRINTS P-type cation-transporting ATPase superfamily signature 689 700 - -
Vvi4g165 888 PRINTS P-type cation-transporting ATPase superfamily signature 711 721 - -
Vvi4g165 888 PRINTS P-type cation-transporting ATPase superfamily signature 766 785 - -
Vvi4g165 888 SUPERFAMILY HAD-like 551 874 IPR036412 -
Vvi4g165 888 SFLD C1.7: P-type atpase like 535 819 - -
Vvi4g165 888 SUPERFAMILY HMA, heavy metal-associated domain 85 150 IPR036163 GO:0046872
Vvi4g165 888 Pfam Heavy-metal-associated domain 87 149 IPR006121 GO:0046872
Vvi4g165 888 SUPERFAMILY Calcium ATPase, transduction domain A 345 435 IPR008250 -
Vvi4g165 888 Gene3D - 543 817 IPR023214 -
Vvi4g165 888 PANTHER ATP7, ISOFORM B 84 879 - -
Vvi4g165 888 ProSitePatterns E1-E2 ATPases phosphorylation site. 554 560 IPR018303 -
Vvi4g165 888 Gene3D - 307 439 - -
Vvi4g165 888 Pfam haloacid dehalogenase-like hydrolase 549 780 - -
Vvi4g165 888 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 318 849 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi4g165 888 SFLD p-type atpase 535 819 IPR044492 -
Vvi4g165 888 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 554 649 IPR023299 GO:0000166
Vvi4g165 888 ProSiteProfiles Heavy-metal-associated domain profile. 84 153 IPR006121 GO:0046872
Vvi4g165 888 Gene3D - 563 697 IPR023299 GO:0000166
Vvi4g165 888 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 256 877 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vvi4g165 888 CDD HMA 87 150 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g165 K17686 copA, ctpA, ATP7; P-type Cu+ transporter [EC:7.2.2.8] - vvi:100264462 1666.74
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g165 Blo01g01443 . Bda01g00641 . . Bpe02g00510 . . . . . . Car09g00315 . . . Cpe06g00260 . . . . . . . Cla05g01629 Cam05g1738 Cec05g1746 Cco05g1803 Clacu05g1729 Cmu05g1614 Cre05g1742 . . Cone17ag0948 . Lsi04g01385 . . . . . . . . . . . . . Cmo09g00365 Cma09g00366 . . Car05g00660 . . Bhi09g03080 . . . . . . . . . . . . . . . . Cme07g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010516 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32