Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g166 ATGGCATTTCGCTTTGGGTTCGTTCTTCTGTGCTTTCTCCTCTGTTTGGCGTTCGGTTCTGTGGTTTCCGACGACGGGGCGACACTGTTGGAGATAAAGAAGTCATTTAGGGATGTTGACAATGTTCTATATGACTGGACTGATTCACCATCTTCAGACTACTGTGTTTGGAGAGGTGTATCTTGTGATAATGTTACCTTCAATGTTATTGCACTTAATCTCTCAGGGTTGAATCTTGATGGGGAAATCTCACCTGCAATAGGAGATCTCAAGGGGCTACTCTCTGTTGATCTGAGGGGGAATCGGCTCTCCGGGCAAATCCCAGATGAGATCGGTGACTGTTCTTCGATGAGCAGCCTGGATTTGTCGTTCAATGAGCTGTATGGGGATATACCATTTTCCATTTCAAAGTTGAAACAACTAGAACAACTAGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTTGGATCTGGCACAGAATAGATTGAGTGGAGAAATACCCAGGCTTATATACTGGAATGAAGTTTTGCAGTATCTTGGGCTGCGAGGAAACAATTTGGTTGGTACTTTGTCTCCTGATATGTGCCAGTTGACTGGGTTGTGGTATTTTGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTTGGACTTGTCCTACAACCGGCTAACAGGAGAGATTCCTTTCAATATTGGGTTCCTGCAAGTAGCTACATTATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTTAGATCTAAGCTGCAACATGTTAAGCGGACCCATCCCTCCTATTCTGGGAAACTTAACTTATACCGAGAAACTGTATTTGCATGGTAACAAGTTGGCCGGATCAATCCCCCCAGAGCTCGGGAATATGACAAAACTCCACTACTTGGAATTGAATGATAATCATCTCACAGGGTCTATTCCATCAGAACTTGGGAAGCTGACCGACTTGTTTGACCTAAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCTCAATGTGCATGGGAACAAATTGAATGGAACTATACCACCTGCATTTGAGAAGCTGGAGAGTATGACATATTTAAATCTCTCCTCCAACAATCTTCGAGGCTCCATTCCTATTGAGTTATCTCGGATTGGTAACTTGGACACCTTGGACATTTCAAATAACAGGATTACTGGCTCCATTCCTTCTTCCCTTGGAGACTTGGAGCATCTTCTAAAACTGAATTTAAGCAGGAACCACTTAACTGGATGTATTCCAGCCGAGTTTGGTAATCTAAGGAGTGTTATGGAGATAGATCTTTCAAATAATCATCTATCAGGAGTGATTCCTCAAGAACTTGGTCAACTTCAGAACATGTTCTTCCTGAGGGTTGAAAACAACAATTTATCAGGGGATGTGACATCACTGATCAACTGCCTCAGTCTTACTGTCCTGAATGTGTCTTATAACAACCTCGGTGGTGATATTCCTACAAGCAATAACTTCTCAAGATTCTCACCAGACAGTTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAGTCGCAATATCTAAAGCAGCTATTCTAGGGATTGCTCTGGGTGCCCTTGTGATTCTTCTCATGATCTTAGTGGCAGCATGTCGGCCACACAATCCAATTCCTTTTCCAGATGGATCACTTGACAAACCAGTTACATACTCAACACCGAAGCTGGTGATCCTTCACATGAATATGGCACTGCATGTGTACGAGGATATCATGAGAATGACGGAAAACTTGAGTGAGAAGTATATAATTGGTTATGGTGCCTCAAGTACAGTGTACAAATGCGTTCTTAAAAACTGCAAGCCAGTGGCTATCAAGAGACTCTACTCTCACAACACACAGTACCTAAAGGAATTCGAGACGGAGCTTGAGACTGTTGGAAGCATCAAACATAGGAATCTGGTCTGTCTACAAGGATATTCCCTGTCCCCTTCTGGGAACCTACTCTTCTATGACTACATGGAAAATGGCAGTCTCTGGGATCTACTTCATGGCCCTACAAAGAAGAAAAAGCTTGATTGGGAAACTCGTCTTCAGATTGCACTTGGAGCAGCTCAAGGGCTTGCTTACCTTCACCATGATTGTAGCCCTCGAATAATTCACAGGGATGTCAAGTCATCAAATATTTTGTTGGACAAGGATTTTGAGGCTCATCTCACTGACTTTGGCATTGCCAAGGTTTTATGCTCATCAAAGTCTCATACTTCTACTTACATTATGGGCACCATTGGTTATATAGACCCTGAGTATGCCCGTACTTCACGTCTCACGGAAAAGTCTGATGTCTACAGCTATGGAATTGTTCTACTTGAGCTGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGATCTTATCCAAAACAACCAACAATGCTGTGATGGAGACTGTTGATCCTGATATCACTGCCACTTGTAAAGATCTTGGAGCGGTAAAGAAAGTGTTTCAGCTGGCCCTTCTATGCACCAAGAAGCAGCCCTCTGATCGGCCCACCATGCACGAAGTGACCCGGGTGCTAGGCAGCCTGGTGCCGGCCACTGCACCAAAACAAATAGCCCTGACCACGACTCCGCCTGCTCCACTTCCATCTACCAAAGTGCCATGCTACATGGACGAGTATGCCAATCTGAAGACCCCTCACATGGTAAATTGCTCATCTATGAGCACCTCAGATGCCCAACTCTTCCTAAAATTTGGTGAAGTAATATCTCAGACAGTGAGTGATGAGGCAGTGCAGTAA 2961 43.77 MAFRFGFVLLCFLLCLAFGSVVSDDGATLLEIKKSFRDVDNVLYDWTDSPSSDYCVWRGVSCDNVTFNVIALNLSGLNLDGEISPAIGDLKGLLSVDLRGNRLSGQIPDEIGDCSSMSSLDLSFNELYGDIPFSISKLKQLEQLVLKNNQLIGPIPSTLSQIPNLKILDLAQNRLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGTIPQNIGNCTAFQVLDLSYNRLTGEIPFNIGFLQVATLSLQGNQLSGQIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLAGSIPPELGNMTKLHYLELNDNHLTGSIPSELGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFEKLESMTYLNLSSNNLRGSIPIELSRIGNLDTLDISNNRITGSIPSSLGDLEHLLKLNLSRNHLTGCIPAEFGNLRSVMEIDLSNNHLSGVIPQELGQLQNMFFLRVENNNLSGDVTSLINCLSLTVLNVSYNNLGGDIPTSNNFSRFSPDSFIGNPGLCGYWLSSPCHQAHPTERVAISKAAILGIALGALVILLMILVAACRPHNPIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHNTQYLKEFETELETVGSIKHRNLVCLQGYSLSPSGNLLFYDYMENGSLWDLLHGPTKKKKLDWETRLQIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKVLCSSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTTNNAVMETVDPDITATCKDLGAVKKVFQLALLCTKKQPSDRPTMHEVTRVLGSLVPATAPKQIALTTTPPAPLPSTKVPCYMDEYANLKTPHMVNCSSMSTSDAQLFLKFGEVISQTVSDEAVQ* 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1578700 1586803 + Vvi4g166 Vvi4g166 784945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g166 986 Gene3D Ribonuclease Inhibitor 187 296 IPR032675 -
Vvi4g166 986 Gene3D Ribonuclease Inhibitor 22 186 IPR032675 -
Vvi4g166 986 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 968 - -
Vvi4g166 986 SUPERFAMILY Protein kinase-like (PK-like) 625 913 IPR011009 -
Vvi4g166 986 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
Vvi4g166 986 ProSiteProfiles Protein kinase domain profile. 647 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g166 986 SUPERFAMILY RNI-like 203 539 - -
Vvi4g166 986 Pfam Protein kinase domain 650 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g166 986 Gene3D Ribonuclease Inhibitor 297 570 IPR032675 -
Vvi4g166 986 Pfam Leucine Rich repeat 520 536 IPR001611 GO:0005515
Vvi4g166 986 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Vvi4g166 986 SMART serkin_6 647 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g166 986 SMART LRR_typ_2 162 186 IPR003591 -
Vvi4g166 986 SMART LRR_typ_2 210 234 IPR003591 -
Vvi4g166 986 SMART LRR_typ_2 449 472 IPR003591 -
Vvi4g166 986 SMART LRR_typ_2 401 425 IPR003591 -
Vvi4g166 986 SMART LRR_typ_2 473 497 IPR003591 -
Vvi4g166 986 SMART LRR_typ_2 90 114 IPR003591 -
Vvi4g166 986 SMART LRR_typ_2 329 353 IPR003591 -
Vvi4g166 986 SUPERFAMILY L domain-like 23 258 - -
Vvi4g166 986 ProSiteProfiles Leucine-rich repeat profile. 427 450 IPR001611 GO:0005515
Vvi4g166 986 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Vvi4g166 986 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Vvi4g166 986 Gene3D Phosphorylase Kinase; domain 1 624 722 - -
Vvi4g166 986 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 5 968 - -
Vvi4g166 986 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Vvi4g166 986 Gene3D Transferase(Phosphotransferase) domain 1 723 926 - -
Vvi4g166 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76605 PF00069 Pkinase 6.90E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g166 K20718 - vvi:100259283 1919.44