Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g168 ATGAGCCTCCGGAAGGGCTCCAAAGTGTGGGTGGAAGACAGGGAATTAGCTTGGGTTGCAGCTGAAGTCGTCGATTTTGTTGGCAAGCAAGTCCAAGTCGTTACTGCTTCTCGGAAGAAGGTTTGGGCATCTAATGAGAAGCTACTCCCAAGGGATCCAGATGCAGAAGACCATGGTGGAGTTGATGATATGACAAAATTAACATATCTTAATGAGCCTGGAGTCCTTTACAACCTTGAGATAAGATATGCTCTCAATGACATTTATACATACACAGGAAGCATATTGATTGCTGTTAACCCATTCACAAAGCTTCCTCATCTTTACAATGTGCACATGATGGAGCAATATAAGGGTGCTCAATTTGGTGTGCTAAGCCCTCATGTTTTTGCAGTGGCTGATGCATCATATAGAGCTATGATGAATGAGGCTCGAAGCCAGTCTATACTTGTCAGTGGTGAAAGTGGGGCTGGGAAAACCGAGACAACAAAGCTTATTATGCAGTATCTTACATATGTTGGTGGGCGTGCTGCTGGTGATGACAGAACAGTTGAGCAGCAAGTTCTAGAATCTAATCCGCTCTTGGAGGCATTTGGTAATGCTAAAACTGTTAGAAATGACAATTCAAGTCGTTTTGGCAAATTTGTTGAGATCCAGTTTGATGCCAATGGTAGAATATCTGGCGCTGCAATCAGAACTTACCTTCTTGAACGGTCCCGTGTAGTTCAGATAACAGATCCTGAAAGGAATTATCACTGCTTTTATCAATTGTGTGCATCTGGAAGGGATGCTGAGAAGTATAAGCTGGGCAAACCAGATAACTTTCACTATTTAAATCAAAGCAAATCCTATGAATTAGAAGGAGTGAGCAATGGTGAGGAATACATGAAGACAAGGAGGGCAATGGGGATTGTTGGTATAAGTCATGATGATCAGGAAGCCATATTTCGAACTTTGGCTGCTATTCTACATCTGGGAAACGTTGAATTTTCTCCTGGCAAAGAGCATGACTCATCTGTTTTAAAGGACCAGAAATCTAACTTTCATATTCAGATGGCTGCTGATCTTTTTATGTGCGATGTCAACCTTCTGCGTGCAACTCTTTGTACACGTACAATCCAAACCCGTGAAGGGGATATTATTAAAGCTCTTGACTGTAATGCTGCTGTTGCTAGTCGGGATGCTTTGGCAAAGACTGTTTATGCTAAGCTGTTTGATTGGCTTGTTGAGAAGGTCAACAGGTCTGTTGGGCAAGATCTGAATTCCCGGGTGCAAATTGGAGTTTTGGACATCTATGGTTTTGAGTGCTTTAAGCATAATAGCTTTGAGCAATTTTGCATTAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTATTTAAGATGGAGCAAGAGGAGTATAGCAAAGAAGAAATTAATTGGAGCTACATTGAATTTATAGACAACCAAGATGTTTTGGATCTGATTGAGAAGAAACCTATTGGAATAATTGCCCTCTTGGATGAAGCTTGCATGTTTCCAAAATCAACACACAAAACATTTTCGACCAAGCTGTTTCAGAATTTACAGACTCACCAAAGGTTGGAGAAGGCAAAATTTTCGGAAACAGATTTTACCATTTCCCACTATGCTGGCAAGGCATGTCATATATCAATTACAGTCACTTATCAAACAGATACCTTCCTAGATAAAAACCGTGATTATGTGGTGGTGGAACATTGCAATCTGTTGTCTTCTTCCAAATGCCCTTTTGTTGCTGGTCTTTTCCCTTCAATGCCTGAGGAATCTTCAAGATCTTCATACAAGTTTTCTTCTGTGGGATCTAGATTCAAGCAACAACTTCAAGCGCTCATGGAAACCCTTAACTCAACAGAGCCTCATTATATTCGCTGTGTGAAGCCAAACTCTTTGAACCGTCCTCAGAAATTTGAGAGTCAGAGTATCTTGCATCAGTTACGCTGTGGGGGTGTTTTAGAGGCTGTTCGAATAAGCCTGGCAGGCTATCCCACTAGGAGGAATTATTCTGAGTTTGTGGATCGCTTTGGCCTATTGGTTCCTGAGCTCATGGATGGAAGTTTTGACGAAAGAACTACGACGGAGAAAATTCTGCTGAAGCTAAAGCTTGAGAATTTCCAATTGGGAAAGACCAAAGTGTTTCTTAGAGCTGGGCAGATCGGTGTTTTAGACTCCAGACGGGCTGAGGTTTTGGATAGTGCAGCCAAACACATTCAGGGTCGATTTAGAACATTTATTGCACACAGGGATTTTGTTTCAATTCGAGCAGCCGCATTTGCACTCCAAGCATACTGCAGAGGATGTCATGCTCGGAATATCTATGCAGCAAAACGACAGGCTGCAGCGGCTCTTTTATTACAAAAATATGTTCGCAGATGGCTACTGAGGAATGCTTATATGCAGCTCTATTCTGCTTCTGTTCTTTTACAGTCTAGCATCCGTGGTTTCTCAATTCGTCAAAGATTTTTGTACCAAAAGAAGCATAGAGCTGCCACTCGAATTCAGGCTCAATGGAGGATGTGCAAGGTTCGATCAATTTTCCGCAATCGTCAAGGTTCGATTATAGCAATCCAATGCCGATGGAGGCAAAAACTGGCAAAAAGAGAGCTCCGGAAGCTTAAACAAGAGGCAAATGAAGCAGGCTTCTTGCGCTTGGCAAAGAATAAACTTGAGAAGCAGTTGGAAGATCTCACTTGGCGTTTGCAACTAGAAAAAAGATTACGGGTGTCTAATGAAGAGGCTAAGTCGGTAGAAATTTCAAAACTTAAAAAAGCATTGGGAACTTTGAACCTTGAGTTAGATGCAGCTAAATTGGTGACAGTTAACGAATGTAACAAGAATGCAGTGCTGCAAAATCAGTTAGATTTATCATTTAAGGAGAAATCTGCTTTGGAAAGAGAACTCATTGGAATGACAGAATTAAGAAAGGAAAATGCATTTTTAAAGAGTTCTTTAGAGAGCTTGGAAAAGAAGAACTCAGAATTGGAGTTCGAGCTTATCAAGGGTCAGAAAGATAGAAAGGATACCTTGGAAAAGTTGCACGAAGTTGAGCAAAAGTGTTTGCAGTTTCAGCAGAATTTACAGAGTTTGGAGGAGAAGCTCTCAAGTTTAGAGGATGAGAATCATGTACTGCGACAAAAAGCATTGACCCCTTCTCCAAAGAGCAACCACCCTGGATTTGTCAAGTCATTTTCAGAAAAGTACACTGGTCCTCTTGCCCTTGCTCAGTCTGACCGGAAGCCTGTATTTGAGTCTCCCACACCTACAAAACTAATTGTTCCTTTTTCACATACCTTATCTGAATCTCGCCGATCAAAGTTTGCTATTGAAAGGCATCCGGAGAACCATGACTTCCTTTCGAGTTGTATTAAAGCGGATTTGGGGTTTAAAGAAGGCAAACCTGTGGCAGCATGTATCATATATAAATGTCTTCTTCACTGGCATGCTTTTGAATCTGAGAGGACGGCTATTTTTGATCATATAATTGAGGGAATTAATGAGGTTCTTAAGGTGGGGGATGAGAATATCGCATTGCCATATTGGTTATCAAATGCCTCAGCGCTGCTATGCCTCCTGCAGAGGAATTTACGATCAAACGGTTTCTTGACTACAATTTCTCAACGTTCTGGTGGATCTTCTGGGATAACAGGAAGGGTTGCACAAAGTCTAAAATCTCCTTTCAAATATATTGGGTTCGATGATAGTATGTCCCATGTTGAAGCAAGGTATCCTGCTATACTATTCAAACAACAATTAACGGCTTGTGTGGAGAAGATTTTTGGCTTAATTCGTGATAATTTGAAGAAAGAAATATCACCGCTACTGGGTTCATGCATTCAGGCACCAAAAACCGTTCGACTACATGCTGGAAAATCAGCTAGATCACCTGGAGGTCTTCCTCAGCAATCACAAAGTAGTCAGTGGGATAGCATCATCAAATTCTTGGATTCTCTTATGGATCGTTTACTGGGAAATCATGTACCCTCCTTTTTCATCCGGAAGCTCATTACGCAGGTTTTCTCATTCATCAATATATCACTATTCAATAGTCTTCTACTAAGACGTGAATGTTGCACATTTTCAAATGGAGAATATGTGAAATCTGGTCTAGCAGATCTAGAAAAATGGATAGCCAGTGTAACAGAGGAGTTTGCAGGAACATCCTGGCATGAGCTAAACTATATTAGGCAAGCTGTTGGGTTTCTGGTGATACATCAGAAGAGGAAAAAATCTTTGGAAGAGATCATGCAGGATCTTTGTCCGGCATTGACCGTTAGACAAATATACCGAATTAGTACTATGTATTGGGATGATAAATATGGCACTCAGAGTGTCTCAAATGAGGTGGTTGCTCAGATGAGGGACATGTTGAATAAGGACAATCAGAATCTAACATCAAATTCATTCTTGTTGGATGATGATCTGAGCATTCCATTTTCTACTGAAGACATATACATGGCTATCCCACCAATGGATCCTTCAGATGTTGAGCTGCCACCATTCTTATCTGAACATCCATCTGTGCAGTTTCTGATCCTCCATCCCAAGTAA 4575 41.01 MSLRKGSKVWVEDRELAWVAAEVVDFVGKQVQVVTASRKKVWASNEKLLPRDPDAEDHGGVDDMTKLTYLNEPGVLYNLEIRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAQFGVLSPHVFAVADASYRAMMNEARSQSILVSGESGAGKTETTKLIMQYLTYVGGRAAGDDRTVEQQVLESNPLLEAFGNAKTVRNDNSSRFGKFVEIQFDANGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASGRDAEKYKLGKPDNFHYLNQSKSYELEGVSNGEEYMKTRRAMGIVGISHDDQEAIFRTLAAILHLGNVEFSPGKEHDSSVLKDQKSNFHIQMAADLFMCDVNLLRATLCTRTIQTREGDIIKALDCNAAVASRDALAKTVYAKLFDWLVEKVNRSVGQDLNSRVQIGVLDIYGFECFKHNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHKTFSTKLFQNLQTHQRLEKAKFSETDFTISHYAGKACHISITVTYQTDTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPSMPEESSRSSYKFSSVGSRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFESQSILHQLRCGGVLEAVRISLAGYPTRRNYSEFVDRFGLLVPELMDGSFDERTTTEKILLKLKLENFQLGKTKVFLRAGQIGVLDSRRAEVLDSAAKHIQGRFRTFIAHRDFVSIRAAAFALQAYCRGCHARNIYAAKRQAAAALLLQKYVRRWLLRNAYMQLYSASVLLQSSIRGFSIRQRFLYQKKHRAATRIQAQWRMCKVRSIFRNRQGSIIAIQCRWRQKLAKRELRKLKQEANEAGFLRLAKNKLEKQLEDLTWRLQLEKRLRVSNEEAKSVEISKLKKALGTLNLELDAAKLVTVNECNKNAVLQNQLDLSFKEKSALERELIGMTELRKENAFLKSSLESLEKKNSELEFELIKGQKDRKDTLEKLHEVEQKCLQFQQNLQSLEEKLSSLEDENHVLRQKALTPSPKSNHPGFVKSFSEKYTGPLALAQSDRKPVFESPTPTKLIVPFSHTLSESRRSKFAIERHPENHDFLSSCIKADLGFKEGKPVAACIIYKCLLHWHAFESERTAIFDHIIEGINEVLKVGDENIALPYWLSNASALLCLLQRNLRSNGFLTTISQRSGGSSGITGRVAQSLKSPFKYIGFDDSMSHVEARYPAILFKQQLTACVEKIFGLIRDNLKKEISPLLGSCIQAPKTVRLHAGKSARSPGGLPQQSQSSQWDSIIKFLDSLMDRLLGNHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLADLEKWIASVTEEFAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIMQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVAQMRDMLNKDNQNLTSNSFLLDDDLSIPFSTEDIYMAIPPMDPSDVELPPFLSEHPSVQFLILHPK* 1525
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 1596630 1632504 + Vvi4g168 Vvi4g168 784947
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g168 1524 Pfam IQ calmodulin-binding motif 836 856 IPR000048 GO:0005515
Vvi4g168 1524 Pfam IQ calmodulin-binding motif 789 807 IPR000048 GO:0005515
Vvi4g168 1524 ProSiteProfiles IQ motif profile. 858 887 IPR000048 GO:0005515
Vvi4g168 1524 Coils Coil 881 915 - -
Vvi4g168 1524 ProSiteProfiles IQ motif profile. 762 791 IPR000048 GO:0005515
Vvi4g168 1524 Coils Coil 955 975 - -
Vvi4g168 1524 Gene3D - 249 306 - -
Vvi4g168 1524 Pfam DIL domain 1343 1446 IPR002710 -
Vvi4g168 1524 ProSiteProfiles Dilute domain profile. 1167 1467 IPR002710 -
Vvi4g168 1524 SMART DIL_2 1342 1449 IPR002710 -
Vvi4g168 1524 PANTHER PROTEIN OPAQUE1-LIKE 3 1521 - -
Vvi4g168 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 789 IPR027417 -
Vvi4g168 1524 SMART MYSc_2a 54 737 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g168 1524 Gene3D - 837 886 - -
Vvi4g168 1524 Gene3D - 738 787 - -
Vvi4g168 1524 Gene3D - 788 836 - -
Vvi4g168 1524 CDD MyosinXI_CBD 1118 1490 IPR037975 GO:0007015
Vvi4g168 1524 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vvi4g168 1524 Pfam Myosin head (motor domain) 61 724 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g168 1524 Gene3D Kinesin motor domain 62 666 IPR036961 -
Vvi4g168 1524 Gene3D - 670 737 - -
Vvi4g168 1524 Gene3D - 435 627 - -
Vvi4g168 1524 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g168 1524 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g168 1524 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g168 1524 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g168 1524 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi4g168 1524 Coils Coil 979 1055 - -
Vvi4g168 1524 Gene3D Myosin VI head, motor domain, U50 subdomain 308 605 - -
Vvi4g168 1524 SMART iq_5 834 856 IPR000048 GO:0005515
Vvi4g168 1524 SMART iq_5 857 879 IPR000048 GO:0005515
Vvi4g168 1524 SMART iq_5 738 760 IPR000048 GO:0005515
Vvi4g168 1524 SMART iq_5 809 831 IPR000048 GO:0005515
Vvi4g168 1524 SMART iq_5 761 783 IPR000048 GO:0005515
Vvi4g168 1524 SMART iq_5 786 808 IPR000048 GO:0005515
Vvi4g168 1524 PANTHER MYOSIN 3 1521 - -
Vvi4g168 1524 ProSiteProfiles IQ motif profile. 810 839 IPR000048 GO:0005515
Vvi4g168 1524 CDD MYSc_Myo11 73 724 IPR036018 -
Vvi4g168 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 786 885 IPR027417 -
Vvi4g168 1524 ProSiteProfiles IQ motif profile. 835 864 IPR000048 GO:0005515
Vvi4g168 1524 ProSiteProfiles IQ motif profile. 787 814 IPR000048 GO:0005515
Vvi4g168 1524 ProSiteProfiles Myosin motor domain profile. 59 736 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g168 K10357 - vvi:100254166 2928.27