Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g168 | ATGAGCCTCCGGAAGGGCTCCAAAGTGTGGGTGGAAGACAGGGAATTAGCTTGGGTTGCAGCTGAAGTCGTCGATTTTGTTGGCAAGCAAGTCCAAGTCGTTACTGCTTCTCGGAAGAAGGTTTGGGCATCTAATGAGAAGCTACTCCCAAGGGATCCAGATGCAGAAGACCATGGTGGAGTTGATGATATGACAAAATTAACATATCTTAATGAGCCTGGAGTCCTTTACAACCTTGAGATAAGATATGCTCTCAATGACATTTATACATACACAGGAAGCATATTGATTGCTGTTAACCCATTCACAAAGCTTCCTCATCTTTACAATGTGCACATGATGGAGCAATATAAGGGTGCTCAATTTGGTGTGCTAAGCCCTCATGTTTTTGCAGTGGCTGATGCATCATATAGAGCTATGATGAATGAGGCTCGAAGCCAGTCTATACTTGTCAGTGGTGAAAGTGGGGCTGGGAAAACCGAGACAACAAAGCTTATTATGCAGTATCTTACATATGTTGGTGGGCGTGCTGCTGGTGATGACAGAACAGTTGAGCAGCAAGTTCTAGAATCTAATCCGCTCTTGGAGGCATTTGGTAATGCTAAAACTGTTAGAAATGACAATTCAAGTCGTTTTGGCAAATTTGTTGAGATCCAGTTTGATGCCAATGGTAGAATATCTGGCGCTGCAATCAGAACTTACCTTCTTGAACGGTCCCGTGTAGTTCAGATAACAGATCCTGAAAGGAATTATCACTGCTTTTATCAATTGTGTGCATCTGGAAGGGATGCTGAGAAGTATAAGCTGGGCAAACCAGATAACTTTCACTATTTAAATCAAAGCAAATCCTATGAATTAGAAGGAGTGAGCAATGGTGAGGAATACATGAAGACAAGGAGGGCAATGGGGATTGTTGGTATAAGTCATGATGATCAGGAAGCCATATTTCGAACTTTGGCTGCTATTCTACATCTGGGAAACGTTGAATTTTCTCCTGGCAAAGAGCATGACTCATCTGTTTTAAAGGACCAGAAATCTAACTTTCATATTCAGATGGCTGCTGATCTTTTTATGTGCGATGTCAACCTTCTGCGTGCAACTCTTTGTACACGTACAATCCAAACCCGTGAAGGGGATATTATTAAAGCTCTTGACTGTAATGCTGCTGTTGCTAGTCGGGATGCTTTGGCAAAGACTGTTTATGCTAAGCTGTTTGATTGGCTTGTTGAGAAGGTCAACAGGTCTGTTGGGCAAGATCTGAATTCCCGGGTGCAAATTGGAGTTTTGGACATCTATGGTTTTGAGTGCTTTAAGCATAATAGCTTTGAGCAATTTTGCATTAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTATTTAAGATGGAGCAAGAGGAGTATAGCAAAGAAGAAATTAATTGGAGCTACATTGAATTTATAGACAACCAAGATGTTTTGGATCTGATTGAGAAGAAACCTATTGGAATAATTGCCCTCTTGGATGAAGCTTGCATGTTTCCAAAATCAACACACAAAACATTTTCGACCAAGCTGTTTCAGAATTTACAGACTCACCAAAGGTTGGAGAAGGCAAAATTTTCGGAAACAGATTTTACCATTTCCCACTATGCTGGCAAGGCATGTCATATATCAATTACAGTCACTTATCAAACAGATACCTTCCTAGATAAAAACCGTGATTATGTGGTGGTGGAACATTGCAATCTGTTGTCTTCTTCCAAATGCCCTTTTGTTGCTGGTCTTTTCCCTTCAATGCCTGAGGAATCTTCAAGATCTTCATACAAGTTTTCTTCTGTGGGATCTAGATTCAAGCAACAACTTCAAGCGCTCATGGAAACCCTTAACTCAACAGAGCCTCATTATATTCGCTGTGTGAAGCCAAACTCTTTGAACCGTCCTCAGAAATTTGAGAGTCAGAGTATCTTGCATCAGTTACGCTGTGGGGGTGTTTTAGAGGCTGTTCGAATAAGCCTGGCAGGCTATCCCACTAGGAGGAATTATTCTGAGTTTGTGGATCGCTTTGGCCTATTGGTTCCTGAGCTCATGGATGGAAGTTTTGACGAAAGAACTACGACGGAGAAAATTCTGCTGAAGCTAAAGCTTGAGAATTTCCAATTGGGAAAGACCAAAGTGTTTCTTAGAGCTGGGCAGATCGGTGTTTTAGACTCCAGACGGGCTGAGGTTTTGGATAGTGCAGCCAAACACATTCAGGGTCGATTTAGAACATTTATTGCACACAGGGATTTTGTTTCAATTCGAGCAGCCGCATTTGCACTCCAAGCATACTGCAGAGGATGTCATGCTCGGAATATCTATGCAGCAAAACGACAGGCTGCAGCGGCTCTTTTATTACAAAAATATGTTCGCAGATGGCTACTGAGGAATGCTTATATGCAGCTCTATTCTGCTTCTGTTCTTTTACAGTCTAGCATCCGTGGTTTCTCAATTCGTCAAAGATTTTTGTACCAAAAGAAGCATAGAGCTGCCACTCGAATTCAGGCTCAATGGAGGATGTGCAAGGTTCGATCAATTTTCCGCAATCGTCAAGGTTCGATTATAGCAATCCAATGCCGATGGAGGCAAAAACTGGCAAAAAGAGAGCTCCGGAAGCTTAAACAAGAGGCAAATGAAGCAGGCTTCTTGCGCTTGGCAAAGAATAAACTTGAGAAGCAGTTGGAAGATCTCACTTGGCGTTTGCAACTAGAAAAAAGATTACGGGTGTCTAATGAAGAGGCTAAGTCGGTAGAAATTTCAAAACTTAAAAAAGCATTGGGAACTTTGAACCTTGAGTTAGATGCAGCTAAATTGGTGACAGTTAACGAATGTAACAAGAATGCAGTGCTGCAAAATCAGTTAGATTTATCATTTAAGGAGAAATCTGCTTTGGAAAGAGAACTCATTGGAATGACAGAATTAAGAAAGGAAAATGCATTTTTAAAGAGTTCTTTAGAGAGCTTGGAAAAGAAGAACTCAGAATTGGAGTTCGAGCTTATCAAGGGTCAGAAAGATAGAAAGGATACCTTGGAAAAGTTGCACGAAGTTGAGCAAAAGTGTTTGCAGTTTCAGCAGAATTTACAGAGTTTGGAGGAGAAGCTCTCAAGTTTAGAGGATGAGAATCATGTACTGCGACAAAAAGCATTGACCCCTTCTCCAAAGAGCAACCACCCTGGATTTGTCAAGTCATTTTCAGAAAAGTACACTGGTCCTCTTGCCCTTGCTCAGTCTGACCGGAAGCCTGTATTTGAGTCTCCCACACCTACAAAACTAATTGTTCCTTTTTCACATACCTTATCTGAATCTCGCCGATCAAAGTTTGCTATTGAAAGGCATCCGGAGAACCATGACTTCCTTTCGAGTTGTATTAAAGCGGATTTGGGGTTTAAAGAAGGCAAACCTGTGGCAGCATGTATCATATATAAATGTCTTCTTCACTGGCATGCTTTTGAATCTGAGAGGACGGCTATTTTTGATCATATAATTGAGGGAATTAATGAGGTTCTTAAGGTGGGGGATGAGAATATCGCATTGCCATATTGGTTATCAAATGCCTCAGCGCTGCTATGCCTCCTGCAGAGGAATTTACGATCAAACGGTTTCTTGACTACAATTTCTCAACGTTCTGGTGGATCTTCTGGGATAACAGGAAGGGTTGCACAAAGTCTAAAATCTCCTTTCAAATATATTGGGTTCGATGATAGTATGTCCCATGTTGAAGCAAGGTATCCTGCTATACTATTCAAACAACAATTAACGGCTTGTGTGGAGAAGATTTTTGGCTTAATTCGTGATAATTTGAAGAAAGAAATATCACCGCTACTGGGTTCATGCATTCAGGCACCAAAAACCGTTCGACTACATGCTGGAAAATCAGCTAGATCACCTGGAGGTCTTCCTCAGCAATCACAAAGTAGTCAGTGGGATAGCATCATCAAATTCTTGGATTCTCTTATGGATCGTTTACTGGGAAATCATGTACCCTCCTTTTTCATCCGGAAGCTCATTACGCAGGTTTTCTCATTCATCAATATATCACTATTCAATAGTCTTCTACTAAGACGTGAATGTTGCACATTTTCAAATGGAGAATATGTGAAATCTGGTCTAGCAGATCTAGAAAAATGGATAGCCAGTGTAACAGAGGAGTTTGCAGGAACATCCTGGCATGAGCTAAACTATATTAGGCAAGCTGTTGGGTTTCTGGTGATACATCAGAAGAGGAAAAAATCTTTGGAAGAGATCATGCAGGATCTTTGTCCGGCATTGACCGTTAGACAAATATACCGAATTAGTACTATGTATTGGGATGATAAATATGGCACTCAGAGTGTCTCAAATGAGGTGGTTGCTCAGATGAGGGACATGTTGAATAAGGACAATCAGAATCTAACATCAAATTCATTCTTGTTGGATGATGATCTGAGCATTCCATTTTCTACTGAAGACATATACATGGCTATCCCACCAATGGATCCTTCAGATGTTGAGCTGCCACCATTCTTATCTGAACATCCATCTGTGCAGTTTCTGATCCTCCATCCCAAGTAA | 4575 | 41.01 | MSLRKGSKVWVEDRELAWVAAEVVDFVGKQVQVVTASRKKVWASNEKLLPRDPDAEDHGGVDDMTKLTYLNEPGVLYNLEIRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAQFGVLSPHVFAVADASYRAMMNEARSQSILVSGESGAGKTETTKLIMQYLTYVGGRAAGDDRTVEQQVLESNPLLEAFGNAKTVRNDNSSRFGKFVEIQFDANGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASGRDAEKYKLGKPDNFHYLNQSKSYELEGVSNGEEYMKTRRAMGIVGISHDDQEAIFRTLAAILHLGNVEFSPGKEHDSSVLKDQKSNFHIQMAADLFMCDVNLLRATLCTRTIQTREGDIIKALDCNAAVASRDALAKTVYAKLFDWLVEKVNRSVGQDLNSRVQIGVLDIYGFECFKHNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHKTFSTKLFQNLQTHQRLEKAKFSETDFTISHYAGKACHISITVTYQTDTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPSMPEESSRSSYKFSSVGSRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFESQSILHQLRCGGVLEAVRISLAGYPTRRNYSEFVDRFGLLVPELMDGSFDERTTTEKILLKLKLENFQLGKTKVFLRAGQIGVLDSRRAEVLDSAAKHIQGRFRTFIAHRDFVSIRAAAFALQAYCRGCHARNIYAAKRQAAAALLLQKYVRRWLLRNAYMQLYSASVLLQSSIRGFSIRQRFLYQKKHRAATRIQAQWRMCKVRSIFRNRQGSIIAIQCRWRQKLAKRELRKLKQEANEAGFLRLAKNKLEKQLEDLTWRLQLEKRLRVSNEEAKSVEISKLKKALGTLNLELDAAKLVTVNECNKNAVLQNQLDLSFKEKSALERELIGMTELRKENAFLKSSLESLEKKNSELEFELIKGQKDRKDTLEKLHEVEQKCLQFQQNLQSLEEKLSSLEDENHVLRQKALTPSPKSNHPGFVKSFSEKYTGPLALAQSDRKPVFESPTPTKLIVPFSHTLSESRRSKFAIERHPENHDFLSSCIKADLGFKEGKPVAACIIYKCLLHWHAFESERTAIFDHIIEGINEVLKVGDENIALPYWLSNASALLCLLQRNLRSNGFLTTISQRSGGSSGITGRVAQSLKSPFKYIGFDDSMSHVEARYPAILFKQQLTACVEKIFGLIRDNLKKEISPLLGSCIQAPKTVRLHAGKSARSPGGLPQQSQSSQWDSIIKFLDSLMDRLLGNHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLADLEKWIASVTEEFAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIMQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVAQMRDMLNKDNQNLTSNSFLLDDDLSIPFSTEDIYMAIPPMDPSDVELPPFLSEHPSVQFLILHPK* | 1525 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1596630 | 1632504 | + | Vvi4g168 | Vvi4g168 | 784947 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g168 | 1524 | Pfam | IQ calmodulin-binding motif | 836 | 856 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | Pfam | IQ calmodulin-binding motif | 789 | 807 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | ProSiteProfiles | IQ motif profile. | 858 | 887 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | Coils | Coil | 881 | 915 | - | - | |
Vvi4g168 | 1524 | ProSiteProfiles | IQ motif profile. | 762 | 791 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | Coils | Coil | 955 | 975 | - | - | |
Vvi4g168 | 1524 | Gene3D | - | 249 | 306 | - | - | |
Vvi4g168 | 1524 | Pfam | DIL domain | 1343 | 1446 | IPR002710 | - | |
Vvi4g168 | 1524 | ProSiteProfiles | Dilute domain profile. | 1167 | 1467 | IPR002710 | - | |
Vvi4g168 | 1524 | SMART | DIL_2 | 1342 | 1449 | IPR002710 | - | |
Vvi4g168 | 1524 | PANTHER | PROTEIN OPAQUE1-LIKE | 3 | 1521 | - | - | |
Vvi4g168 | 1524 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 28 | 789 | IPR027417 | - | |
Vvi4g168 | 1524 | SMART | MYSc_2a | 54 | 737 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Vvi4g168 | 1524 | Gene3D | - | 837 | 886 | - | - | |
Vvi4g168 | 1524 | Gene3D | - | 738 | 787 | - | - | |
Vvi4g168 | 1524 | Gene3D | - | 788 | 836 | - | - | |
Vvi4g168 | 1524 | CDD | MyosinXI_CBD | 1118 | 1490 | IPR037975 | GO:0007015 | |
Vvi4g168 | 1524 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 4 | 53 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
Vvi4g168 | 1524 | Pfam | Myosin head (motor domain) | 61 | 724 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Vvi4g168 | 1524 | Gene3D | Kinesin motor domain | 62 | 666 | IPR036961 | - | |
Vvi4g168 | 1524 | Gene3D | - | 670 | 737 | - | - | |
Vvi4g168 | 1524 | Gene3D | - | 435 | 627 | - | - | |
Vvi4g168 | 1524 | PRINTS | Myosin heavy chain signature | 89 | 108 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Vvi4g168 | 1524 | PRINTS | Myosin heavy chain signature | 146 | 171 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Vvi4g168 | 1524 | PRINTS | Myosin heavy chain signature | 193 | 220 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Vvi4g168 | 1524 | PRINTS | Myosin heavy chain signature | 425 | 453 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Vvi4g168 | 1524 | PRINTS | Myosin heavy chain signature | 478 | 506 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Vvi4g168 | 1524 | Coils | Coil | 979 | 1055 | - | - | |
Vvi4g168 | 1524 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 308 | 605 | - | - | |
Vvi4g168 | 1524 | SMART | iq_5 | 834 | 856 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | SMART | iq_5 | 857 | 879 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | SMART | iq_5 | 738 | 760 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | SMART | iq_5 | 809 | 831 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | SMART | iq_5 | 761 | 783 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | SMART | iq_5 | 786 | 808 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | PANTHER | MYOSIN | 3 | 1521 | - | - | |
Vvi4g168 | 1524 | ProSiteProfiles | IQ motif profile. | 810 | 839 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | CDD | MYSc_Myo11 | 73 | 724 | IPR036018 | - | |
Vvi4g168 | 1524 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 786 | 885 | IPR027417 | - | |
Vvi4g168 | 1524 | ProSiteProfiles | IQ motif profile. | 835 | 864 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | ProSiteProfiles | IQ motif profile. | 787 | 814 | IPR000048 | GO:0005515 | |
Vvi4g168 | 1524 | ProSiteProfiles | Myosin motor domain profile. | 59 | 736 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g168 | K10357 | - | vvi:100254166 | 2928.27 |