Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g170 ATGCGGAATATTTGGTTGTTCTTCATGGATTTTGATGGGGGTTCTCCATATATTGATCCCACTGAGTCCATATCAAATAGTTTTGGGGGTCACTTGCTTTCCCATGTTACTTCATTTGTGGACAACTCTGTTTATGGGTCTAGACGCATATATGCCCCCGGCAGTGCAGCTCTTCAAGAAGCATTTGACTGCATCTCAAAATTTGCTGGTGCAGTACTTCTGCAGCTCTCTAGTGGGTCAAATTCCAATATAAGGCACAGGTCGTCGGGTGATCCACACGTTTCAAAACCTAAAAACTGGAAATCCTGTGCAAAAGTGGATCCAACTTGTTCTTGTAAGCATAATCTTACTGGATTTTGCTTCAGTTCTAGGTCAAAAGGAAAAGCCTCTGGCCGGTTGCCTTTTGATGAAGTTTCAAATTTCACAATTAGACAGTTCTGTAGAGAAGTTCAAGGGCTTGAATCAATTCCTGTCTTCACATTAGCAGCTGCTTTGGTACCGCCATTAGACAATTTAACTCCCAAAGTAATGGCTGTTCCACTGGAGGATACTGGTGTAAGGTCCTGTGAGATTGAGCACCAGAGGTCTTCTCATTTTTCTTTTCCCGATTTAAACTGGACAAGACATGCAGTTGAGCCCAGGACTGGCATTGAGTTCCCTACAATTTTGGACAACATTTTAGTTGGAGAAAATAATTCCAGTTTAACTTCAGAGGTCCTTGTAGGAACTGGATCCCGAACTATGAAAATAATAAAAATCAAGTCTCTGAAGGTTTATGCTTTTGGTTTTTATGTTCATCCTTTATTGATTTGTGAGAAGTTGGGTCCAAAGTATGCTTCTATTCCAGTGGATGAATTGAATAAACGACAGGATTTTTATGAGGATCTTCTCAGGGAGGATATTAACATGACTGTTAGGCTTGTGGTTAATTGCAATGGGATGAAAATCAACACTGTGAGAGATGCTTTTGAGAAATCCCTTCGAAACCGATTATTGAAGACAAACCCAGACACCGATTACCAGTGCCTGACAACATTTGGATCTTATTTCACACAAGATATCCCATTACCTGCGGGGACAACAATTGATTTCCGACGAACAGCTGATGGACAACTAATCACTGAAATCGGAGGCAGAACGATTGGAGTAGTTCATAGCAAAGATCTTTGTAGGGCCTTCTTTGACATGTACATCGGAGATGTTCCCGTGTCACACCAAACAAAAGAAGAGATCGGTAGAAACGTTGCTAATATCATAAGGAGATGCTAA 1269 41.06 MRNIWLFFMDFDGGSPYIDPTESISNSFGGHLLSHVTSFVDNSVYGSRRIYAPGSAALQEAFDCISKFAGAVLLQLSSGSNSNIRHRSSGDPHVSKPKNWKSCAKVDPTCSCKHNLTGFCFSSRSKGKASGRLPFDEVSNFTIRQFCREVQGLESIPVFTLAAALVPPLDNLTPKVMAVPLEDTGVRSCEIEHQRSSHFSFPDLNWTRHAVEPRTGIEFPTILDNILVGENNSSLTSEVLVGTGSRTMKIIKIKSLKVYAFGFYVHPLLICEKLGPKYASIPVDELNKRQDFYEDLLREDINMTVRLVVNCNGMKINTVRDAFEKSLRNRLLKTNPDTDYQCLTTFGSYFTQDIPLPAGTTIDFRRTADGQLITEIGGRTIGVVHSKDLCRAFFDMYIGDVPVSHQTKEEIGRNVANIIRRC* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1648095 1654700 - Vvi4g170 Vvi4g170 784949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g170 422 Pfam Chalcone isomerase like 239 411 IPR016087 GO:0016872
Vvi4g170 422 Gene3D - 269 412 IPR016089 -
Vvi4g170 422 SUPERFAMILY Chalcone isomerase 211 420 IPR036298 GO:0016872
Vvi4g170 422 PANTHER FATTY-ACID-BINDING PROTEIN 2 9 422 - -
Vvi4g170 422 PANTHER FATTY-ACID-BINDING PROTEIN 2 9 422 - -
Vvi4g170 422 Gene3D - 211 397 IPR016088 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g170 - - - vvi:100266232 860.907
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g170 . . . Bda03g00122 Bpe02g01563 . Bma04g00110 . . . Cma01g01699 . . . . . . . . . . . . . Cla05g01633 Cam05g1742 Cec05g1751 Cco05g1808 Clacu05g1734 Cmu05g1618 Cre05g1746 . . . . . . . . . Blo18g00259 Bda01g01350 . . Bpe04g00107 Bma01g00908 . Sed13g1913 . . . . Car01g01314 . . Cpe02g00294 Bhi09g03075 Tan01g3482 . . Hepe01g1921 . . . . . . . . . . . . Cme07g00171
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004076 2 3 1 2 2 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 8 1 44