Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g171 ATGGGTTCAATCTGCAGCAGACACAAACATTACCATGAAGCAGATGCTGAGGAGAATGCACAGGCTGCAGAAATAGAAAGGAGGATTGAGCAAGAAACAAAAGCAGAAAAGCATATTCAGAAACTTCTACTGCTTGGTGCTGGAGAGTCGGGGAAGTCCACAATTTTTAAGCAGATAAAACTTTTGTTTCAAACTGGCTTTGACGAGGCAGAGCTAAAGAGCTATATCTCAGTCGTCCATGCCAATGTATATCAGACAATAAAAGTTTTGTATGATGGGTCAAGGGAATTGGCTCAAAATACAACGGATTCCTCAAAGTATGCTTTGTCCATTGAAAATAAGGATATAGGAGAAAAATTATCAGAAATTGGAGGCAGGTTAGATTATCCACGTCTCACAAGAGAGCTTGCAAATGAGATAGAGACGCTGTGGAAAGATGCTGCAATTCAGGAAACTTATTCTCGTGGTAATGAACTTCAAGTGCCGGATTGTGCACATTATTTTATGGATAATTTGGAGAGATTGTCTGATGCAAATTATGTTCCAACAAAGGAGGATGTTCTCTATGCAAGAATTCGTACAACAGGTGTCGTAGAAATCCAGTTCAGTCCTGTTGGAGAGAATAAGAAAAGTGGCGAAGTATATAGATTATTCGATGTTGGAGGCCAGAGAAATGAAAGAAGGAAATGGATCCATTTATTTGAAGGTGTTACAGCTGTAATTTTTTGTGCTGCTATTAGCGAGTATGACCAGACTCTCTTCGAGGATGAAAACAAGAACCGAATGATGGAGACAAAGGAACTCTTTGAGTGGGTCCTGAAGCAACCATGTTTTCAGAAAACATCCTTCATGCTGTTTTTAAACAAGTTTGATATATTTGAGAAGAAAGTTATAAAAGTGCCACTAAATGTATGTGAATGGTTCAAAGACTACCAACCAGTTTCAACAGGAAAACAAGAAATTGAGCATGCATACGAGTTTGTTAAGAAGAAATTTGAAGAGTTGTATTTTCAGAGCACTGCTCCTGATTGTGTGGACCGCGTCTTTAAGATATACAGGACCACTGCCCTTGATCAAAAGCTTGTGAAGAAAACCTTCAAGCTGGTAGATGAGACTTTGAGAAGGAGAAATCTCTTTGAGGCTGGCTTGTTGTGA 1155 39.22 MGSICSRHKHYHEADAEENAQAAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVVHANVYQTIKVLYDGSRELAQNTTDSSKYALSIENKDIGEKLSEIGGRLDYPRLTRELANEIETLWKDAAIQETYSRGNELQVPDCAHYFMDNLERLSDANYVPTKEDVLYARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFQKTSFMLFLNKFDIFEKKVIKVPLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQSTAPDCVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLFEAGLL* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1658854 1667251 - Vvi4g171 Vvi4g171 784950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g171 384 Coils Coil 13 33 - -
Vvi4g171 384 CDD G-alpha 40 378 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g171 384 PRINTS Plant G protein alpha subunit signature 27 36 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g171 384 PRINTS Plant G protein alpha subunit signature 77 90 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g171 384 PRINTS Plant G protein alpha subunit signature 92 106 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g171 384 PRINTS Plant G protein alpha subunit signature 116 130 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g171 384 PRINTS Plant G protein alpha subunit signature 200 215 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g171 384 PRINTS Plant G protein alpha subunit signature 270 281 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g171 384 PRINTS Plant G protein alpha subunit signature 319 334 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g171 384 PRINTS Plant G protein alpha subunit signature 336 348 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g171 384 ProSiteProfiles G-alpha domain profile. 38 384 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g171 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 381 IPR027417 -
Vvi4g171 384 Pfam G-protein alpha subunit 22 372 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g171 384 Gene3D - 41 372 IPR027417 -
Vvi4g171 384 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 1 384 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g171 384 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 1 384 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Vvi4g171 384 SMART galpha_1 19 383 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g171 384 PRINTS Alpha G protein (transducin) signature 41 56 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g171 384 PRINTS Alpha G protein (transducin) signature 180 202 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g171 384 PRINTS Alpha G protein (transducin) signature 215 232 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g171 384 PRINTS Alpha G protein (transducin) signature 237 265 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g171 384 PRINTS Alpha G protein (transducin) signature 283 292 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi4g171 384 Gene3D - 68 193 IPR011025 GO:0007165
Vvi4g171 384 SUPERFAMILY Transducin (alpha subunit), insertion domain 67 192 IPR011025 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g171 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - vvi:100244127 750.74
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004075 2 3 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 7 2 1 44