Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g172 ATGGTAGCCTCCTGTCTCAGTCCCACCTCCCTGTACGGAGGCTACCTCCGCCGCTGTTTCACCGCATCGGGGTTGTCCTCGCAAACCATTGATATCGACCACCAAACGAGTATCCACTTCTGGGGCCCCAACACAGCCTCCCATAAACCTGTACTACTTCTGATTCACGGGTTCGGGCCAGTCTGCCTTTGGCAGTGGCGCCGTCAGGTACAGTATTTCTGTGCGGACTTCGATGTCTACGTGCCTGACCTCATCTTCTTCGGCGACTCCACCACCACGTCGTCGGACCGGACAGAGGTTTTTCAGGCGGTTTCGATCGGAAAACTGCTGGAGAAGGTGGGAATTGAAAGGTACGCTGTAATGGGGACGAGCTACGGCGGCTTCGTTGCGTACCACATGGCTTATATGTGGCCGGAGAGGGTGGAGAAGGTGGTGATAGCGAGCTCGGCGGTGAATTTGATTAGGAGAGATAACGAGGAGCTGTTGCAGAGGGCGAAATTGAAGGAGATTGAGGATCTGATGCTGCCGCGGACGGCGGAGCAGCTCAGGACGTTGACTTCTCTGGCGGTGTTCAAGCGTTTACCGACGATTCCGAATTTCTTGTGGAATGACATTATCGACAAGCTATACTCTGACAATAGAGAGGAAAAGAAGGGACTTTTGAAGGGATTAACACTCGGACGCGAAGATACACCAAACATATCTCCTCTTCAACAGGAGGTGTTGATCATATGGGGAGACCATGACCAAATATTTCCCTTGGGAAAGGCTATTGAACTCAAAGAGGTTCTGGGAGAGAAGGCGAAGCTGGAAGTAATGAAGAAGACGGCACATATGCCCCAAGTTGAATTCCCGGAACGTTTCAATGCCATTGTCAAAAACTTCTTGTGTGCCTGA 897 51.73 MVASCLSPTSLYGGYLRRCFTASGLSSQTIDIDHQTSIHFWGPNTASHKPVLLLIHGFGPVCLWQWRRQVQYFCADFDVYVPDLIFFGDSTTTSSDRTEVFQAVSIGKLLEKVGIERYAVMGTSYGGFVAYHMAYMWPERVEKVVIASSAVNLIRRDNEELLQRAKLKEIEDLMLPRTAEQLRTLTSLAVFKRLPTIPNFLWNDIIDKLYSDNREEKKGLLKGLTLGREDTPNISPLQQEVLIIWGDHDQIFPLGKAIELKEVLGEKAKLEVMKKTAHMPQVEFPERFNAIVKNFLCA* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1670194 1672597 - Vvi4g172 Vvi4g172 784951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g172 298 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 5 297 - -
Vvi4g172 298 PRINTS Alpha/beta hydrolase fold signature 76 91 IPR000073 -
Vvi4g172 298 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Vvi4g172 298 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Vvi4g172 298 PRINTS Alpha/beta hydrolase fold signature 241 255 IPR000073 -
Vvi4g172 298 Pfam alpha/beta hydrolase fold 50 283 IPR000073 -
Vvi4g172 298 PANTHER SI:DKEY-122A22.2 5 297 - -
Vvi4g172 298 Gene3D alpha/beta hydrolase 17 298 IPR029058 -
Vvi4g172 298 SUPERFAMILY alpha/beta-Hydrolases 26 296 IPR029058 -
Vvi4g172 298 PRINTS Epoxide hydrolase signature 76 91 IPR000639 GO:0003824
Vvi4g172 298 PRINTS Epoxide hydrolase signature 120 133 IPR000639 GO:0003824
Vvi4g172 298 PRINTS Epoxide hydrolase signature 134 147 IPR000639 GO:0003824
Vvi4g172 298 PRINTS Epoxide hydrolase signature 273 295 IPR000639 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g172 - - - vvi:100266471 596.275
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g172 Vvi9g90 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g172 . . . . Bpe02g01564 . . . Cmo05g00422 . . Cma05g00410 . . Sed11g0859 . . Bhi04g01523 Tan02g1575 Cmetu03g2273 . Hepe08g1441 . Lcy13g2228 . . . . . . . . . . Cone20ag0294 Lsi04g02234 . . . Blo17g00271 Blo18g00258 Bda01g01351 . Bpe14g00283 . Bma01g00907 . . . . . . . Car05g00345 Cpe11g00350 . . . . . . . . Cla08g00981 Cam08g1430 Cec08g1008 Cco08g1131 Clacu08g1135 . Cre08g0919 . . Chy03g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009871 1 2 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 33