Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g173 ATGACTCTGAAGATCACATGGAAGACTATCATGCCAGGTTGTTACAAGACTGAGACCCCTATCGCCGAGTCGAGGAAGAAACCAGTTTTGAAGCAGGGTTCTTTCCAGAGACTATCTCTTTCCGACTTGAGCAACCCCGGTTCCCCGCTCTCCGTCGATGATATATCGAATTCCCTTATTGGTTCCAACCTCTATACCTTCACCCTTGCAGAGCTTAGAGAGATCACACACAACTTTTCGCCCAGTAATCTACTTGGAGAAGGCGGGTTTGGACCGGTTTACAAGGGGTTCATAGACGAAAAGCTTAGGCCAAAGTTGAAGGCTCAGCCTGTAGCTGTGAAATTACTTGACTTGGATGGCCTTCAAGGCCATAGAGAATGGCTGGCAGAAATAATCTTTCTTGGGCAACTGAGGCATCCACACCTTGTTAAACTGATTGGATACTGTTGTGAAGACGAGCACAGGCTTCTGATATATGAGTACATGGCAAGAGGGAGCTTAGAAAATCAACTCTTCAGAAGATATTCTGCTGCCTTGCCATGGTCAGCCAGGATGAAGATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATACCGGGATTTTAAGGCTTCCAACATTTTATTAGACCCTGATTACACTGCTAAACTCTCTGATTTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATGCCGCTCCTGAGTATATCATGACTGGACATTTGACAACCATGAGTGATGTATACAGCTTTGGAGTTGTGCTGTTGGAGGTAATAAGTGGTAAACGGTCGATGGACAAAACAAGGCCTACTGAATTGGCCTACAAATGTCTGAGCCACCAAGCCAAGGCTAGGCCGGCAATGAGCGATGTGGTGAAGATACTGGAGCCTCTGCAGGACTTTGATGATACTGTGATCAGCCCTTTTGTGTATGTGGTTCCAGCTGAAGGGGAGGTAGGAGATGAGAGTGAAAGCGAGAAGGACATTTCACATCAAGAAATCAAAGAAAGGGACGACGGCCAGCAAAACCGGCCCGCCTGGAGACATAGAATCAAGCTGCCACTGTCTCTAGTGGCTTACTCGGAATCTGCTTTGTATAAAAAATTTAGACATGAGTTGAACACTCAAACATATCAGTAA 1203 47.13 MTLKITWKTIMPGCYKTETPIAESRKKPVLKQGSFQRLSLSDLSNPGSPLSVDDISNSLIGSNLYTFTLAELREITHNFSPSNLLGEGGFGPVYKGFIDEKLRPKLKAQPVAVKLLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEDEHRLLIYEYMARGSLENQLFRRYSAALPWSARMKILFGAAKGLAFLHEGDKPVIYRDFKASNILLDPDYTAKLSDFGLAKDGPEGDETHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLEVISGKRSMDKTRPTELAYKCLSHQAKARPAMSDVVKILEPLQDFDDTVISPFVYVVPAEGEVGDESESEKDISHQEIKERDDGQQNRPAWRHRIKLPLSLVAYSESALYKKFRHELNTQTYQ* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1690952 1693342 + Vvi4g173 Vvi4g173 784952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g173 400 MobiDBLite consensus disorder prediction 338 366 - -
Vvi4g173 400 Gene3D Transferase(Phosphotransferase) domain 1 162 328 - -
Vvi4g173 400 Pfam Protein tyrosine and serine/threonine kinase 83 308 IPR001245 GO:0004672|GO:0006468
Vvi4g173 400 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Vvi4g173 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vvi4g173 400 MobiDBLite consensus disorder prediction 345 366 - -
Vvi4g173 400 ProSiteProfiles Protein kinase domain profile. 79 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g173 400 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL12-RELATED 25 292 - -
Vvi4g173 400 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL12-RELATED 293 354 - -
Vvi4g173 400 SUPERFAMILY Protein kinase-like (PK-like) 66 336 IPR011009 -
Vvi4g173 400 PANTHER OS01G0588500 PROTEIN-RELATED 293 354 - -
Vvi4g173 400 PANTHER OS01G0588500 PROTEIN-RELATED 25 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g173 - - - vvi:100262822 787.719
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g173 Vvi11g76 ECH
Vvi4g173 Vvi9g83 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000600 4 3 3 2 3 0 5 0 0 3 3 0 5 4 0 5 0 0 5 0 3 0 1 0 0 3 1 0 0 3 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76606 PF07714 PK_Tyr_Ser-Thr 1.80E-45 CL0016 Vvi PK