Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g179 ATGCATTCTCCGGAATTGGCCAATCCTCTGAAGCGAAGTTTCGACGAGATGAACTTGAAACGCGACGCAGACGATGATTCGAATCCACCGCCATCGCCATTGCCATCTTCATCGTCTTCTTCCAAGGAGCTCAGTCCAAGAAGCTATCAGTGGAAGGTGTTCGAAGTCGCGAAGCGGCGGAACACGATTGCGGTGTTGGACACTGGGACTGGGAAGACAATGATCGCTTTGATGTTGATTAGGGAGATAGGTCAAGCTGTGAAGGCTGATGGCCGTAAATTATTCATTATTTTCTTGGCTCCTACTGTTCATCTGGTTAATCAGGCATGCTTCTTTTTCATTTTTTCTCAATTTAAAGTTATAAAGGACAGTACAGGTTTTGAAGTTGAAGAATACTATGGAGCCAAGGGGGTTGATGAATGGAGTGCAAAGTCCTGGGAGAAGGAAATTAGTGAGCACGATGTACTTGTTATGACACCCCAGATCCTATTAGATGCCTTGAGGAAAGCATTCTTAAGTCTGGAAACAGTATGCTTGATGATAGTTGATGAGTGCCATCGTGCCACTGGTAACCATCCCTATACAAAAATAATGAAGGAATTTTATCACAAATCTGTCGACAAGCCAAAGATTTTTGGAATGACAGCATCACCTGTAATTAGAAAAGGTGTCTCATCTTCTATGGATTGTGAGAATCAAATATCAGAACTTGAAAGCATTTTGGACTGCCAGATTTATACTATTGAGGACAGGACAGAACTGGAAGTATTTATTCCTTCTGCAAAAGAAATCAATAGATTTTATGATGCATCTCAGTTTCACAATTTGGATTTGAAAGCAAAGCTAAAATCTTCATGGTCCAAGTTTGACAATTTGTTGCTAAATTTGCAAGGGTCACCAATGACTCAGTACAAAGACATGGATGATAAACTTAAGGCATTGCGGAAACGCTTGTCCAATGATCATGCAAAGATCTTGTATTGCCTGGATGACCTTGGACTCATATGTGCTTATGAGGCTGTTAAAGTCTGTATAGAGAATGTTTCAAATGCTCAAGAGGAATTTGAATTTTATAGACAAAGTTCTTCCCAGTGTAAATGTTTTCTTCAGGAGGTTTTGGGCATCATTGGGGGATATCTGCCACATGGTGATGGAAATTATTTGAATTCTGAATCTGACATTCTAAAGGCAGTAGATAAGGGTTATATAACTCCCAAATTACATGAACTCCTTCAACTTTTCCAATCCTTTGGAGTAGCTAGGAAAGTATTGTGCCTCATTTTTGTAGAGAGAATCATAACAGCTAAAGTAATCGAAAGATTCATTAAGAAAATTATATACTTATCACATTTCACGGTTTCATATTTAACTGGGAGTAATTCATCGGTCGATGCACTTGCACCAAAGGCGCAAAGGGAAACCTTGGAATCATTTCGCTCTGGGAAGGTTAACCTATTATTTGCAACTGATGTGGTTGAGGAGGGAATTCATGTGCCAAACTGCTCCTGTGTTATTCGTTTTGACCTACCGAAGACTGTTCGTAGTTATGTCCAATCACGAGGACGAGCTCGGCAAAGTGATTCCCAATTTATCATCATGCTTGAGAGGGGAAACACAGAGCAAAGGGATCAATTGTTTGATATCATCAGGAGTGAGTATTCCATGACGGATACTGCTACAAATAGAGACCCTGATGGGTACACCTTGAAAGCATACACTATTGAGGAAATGGATTCATATTTTGTGGATTCGACTGGTGCATCTGTCACTGCAGATTCTAGTGTCAGTCTTATTCATCGATATTGTGAAAAGCTTCCAGGAGATAAGTACTTCACTCCTAAGCCATTTTTTCATTTCACATATTTGGAAGGGATGTATGAGTGTAAATTAACATTACCTCCTAATGCGGCTTTTCAAACAATTATTGGTCCTGGGAACAAGAATTCTCATTTATCAAAACAGCTAGTATGCTTGGAAGCATGTAAGAAGCTTCATCAAATGGGGGCTCTCGATGATCATCTTCTCCCTTATGTTGAAGAGCCTTCAGAAAATGATATCATTGTAAAAAGCAAAGGATCAGCTGCAGGTGCAGGAACAACAAAAAGGAAAGAATTACATGGGACAACTCAAACTTGTGCATTATCTGGAACTTGGGGAGATAAAATTGATGGGGCCATTTTCCAGGCCTATAAAATAGATTTCTCCTGCAATATTGTTAATGAGCTGTATTCGGGATTTGTTCTTTTGATTGAATCAAAACTGGATGATGATGTGGGAAATATTGAAATGGAACTCTACTTGATCTCCAAGTTTGTCAGAACATCTGTTTCTTCATGCGGTCAAGTGTCTCTAGATGCAGAACAGGTGATGAAAGCAATGCGCTTCCACGAATTGTTCTTTAACAGTCTGTTTGGGAGATTGTTTATTGGATCAAAATCATCTGGAGTGCGAAGAGAATTTTTACTTAACACACAACAAAAATCATTATGGAGCTCATCAAACATGTATTTGCTGTTACCAATTGAGTCATCAAACATTCCAAGTGATGAATCTTGGAGAATAAATTGGCCAGGAATCAACTCTTGTGCTTCTGTTGTAGAATTTTTAGAAAAACGTTCTCAGTTAAGTACTGGAAATATGAATGATGATACTGGAAATCCATCACCCTGTAGCACTGGCTTAGTTGAGACAGAATGCAAAAGCATCAGTACTGTCCACTTAGCTAATAATTCAGTTCACGTGAACAACCTTAAAAATATGGTGGTTTTGGCTATTCATACAGGAAGAATTTACTCCATTCTAGATGTAGTGATTGACACATCTGCTGAGAGTCCTTTTGATGGAAGTGCTGATGTTAACTCTTCTAATTATACAACCTTTGCTGAGTACTTCAATAACAAGTATGGGATTGTACTAATGTATCCGGGACAGCCTCTGTTGCTGTTAAAGCAAAGTCATAATGCACATAATCTTCTTGTAAACTTTAACGATGAAGGTGGTGAGGCATTGCAAACTGGCCAGAAAATGCTCAACGAGAAGGCTCAAACTCATGTTCATATGCCACCTGAGCTTTTAGTCAGTATTGAAGTACCAATAACTGTCTTAAAATCATCTTACTTACTCCCATCATTGATCCACCGTCTGGAGTCCTTGATGTTAGCTAGCCAGCTTAGAGAAGAGATTGCTTTTACTACTGGCTCTCAGATCTCAAGCTCATTGATTCTGGAAGCAATTACAACTCTTCGATGCTCTGAAAGTTTTTCTATGGAGCGTTTAGAATTGCTTGGGGATTCAGTGTTGAAGTATGCTGTGAGCTGCCACCTCTTTCTCAAATATCCCAAGAAACATGAAGGGCAATTATCTGCTAGACGCTCATGGGTTGTTTGTAACTCAACCCTTCATAAATTGGGGACTGATCGCAGTTTACAGGGCTATATAAGAGATGGTGCATTTGATCCTCGTCGTTGGGTTGCTCCAGGACAGCGTTCTATACGCCCTGTTCCTTGTTCATGTGGGGTGGATGCATTGGAGGTGCCTTTAGACGGAAAATTTCAAACTGAAGACACAAAAATTGTGGTTGGAAAATCCTGTGATAGGGGTCATAGATGGATGGGCTCAAAAACGATAGCCGATTGTGTTGAAGCCCTTATAGGAGCATACTATGTTGGTGGTGGATTAAATGCTGCTCTTCATTTGATGAAATGGTTTGGTATTGATGTTGAACTTGAGCCCTCATTGGTAGATGAAGCCATTGCCACTGCATCTCTCCGAACTTACATTCCTAAAGCTAATGAGATTGAAATCCTAGAGTCTAAGATTGGGTATGAATTCTCTGTCAAGGGTCTGTTACTGGAGGCTATAACACATGCAACTGAGCAAGAACTTGGAGTTGGCTACTGCTACCAGCGGCTTGAATTTCTTGGCGACTCTGTGCTGGATGTGCTTATTACATGGCATCTCTATCAGAGCCACAGAGATATTGATCCAGGGGAGTTGACTGACCTGCGATCAGCTTCTGTTAATAATGAAAGTTTTGCCCAAGTTGCTGTAAGACGGAACCTTCAGCAGCATCTTCAACATTGCTCTGGTTTACTTTTAGGTCAAATAAAAGAGTATGCGAAGTATCTTTCTGGTTCTGATGATGTCCCCAATCCACTCCAGAGCACAAAAGGTCCTAAAGCTCTTGGAGACTTGGTGGAGAGTATAGCAGGAGCAATACTAATTGATACCAAGCTTAATCTCAATGAAGTGTGGAGAATCTTTAAACCACTTTTATCTCCAATAGTAACCCCTGATAAACTTGAGCTGCCTCCACTGCGTGAACTGAATGAATTATGTGATTCTCTCGGCTATTTTATAAAAGAAAAATGTACGAATAAGGGAGAACTGGTGCATGCGGAGCTTAGATTACAGATGATTGATGTCCTATTGGTTGGTGAGGGATGTGGCCGGAACAAAAAGGCTGCAAAAGGTCAAGCTGCTGCTCAATTGTTGAAAAACCTGGAGAAAAGAGGAATTTCATACTCCCGGAGTAATTCCAAGAGGAGAAAACAGGGTGCAGACTTGGTTGGTGTTTCATCGTCCCTGAACATGGGTGGTGATGCATGTGGACAATCCAATAATGAAGATTCTTCAGAGTTGATAAAATTCCACAAAAAACAGAAGACAACAGGAATGCAGTTGTGTACAAGAACTTCCATTGCCAACAACTGTCTCGAGAATGCTTGCAAACCGAAGCTCGACACCCCAGTCATTAAATCAATAAACATGAAGAAAGGAGGACCCCGCTCCTCTCTTTATGAATTATGCAAACGACTACAGTGGCCAATGCCCAGTTTTGAATCAAAAGAACAAAGATCAAGATTCCCGATTATATTTGGTGAAGGCTCTGAAAGAAGGGAAGGCTTTAACAGTTTCATATCCAGCATCTCCTTGCATATACCCAATTGCGGTGTCATGGAATGCCGGGGTGATCATAGAGCAGACAAGAAGAGTTCACTCGACTCTGCAGCCCTTGTCATGCTTCATGAGCTTCAACGACGGGGGAAGCTCATCATCCATGATTAA 5067 40.66 MHSPELANPLKRSFDEMNLKRDADDDSNPPPSPLPSSSSSSKELSPRSYQWKVFEVAKRRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHLVNQACFFFIFSQFKVIKDSTGFEVEEYYGAKGVDEWSAKSWEKEISEHDVLVMTPQILLDALRKAFLSLETVCLMIVDECHRATGNHPYTKIMKEFYHKSVDKPKIFGMTASPVIRKGVSSSMDCENQISELESILDCQIYTIEDRTELEVFIPSAKEINRFYDASQFHNLDLKAKLKSSWSKFDNLLLNLQGSPMTQYKDMDDKLKALRKRLSNDHAKILYCLDDLGLICAYEAVKVCIENVSNAQEEFEFYRQSSSQCKCFLQEVLGIIGGYLPHGDGNYLNSESDILKAVDKGYITPKLHELLQLFQSFGVARKVLCLIFVERIITAKVIERFIKKIIYLSHFTVSYLTGSNSSVDALAPKAQRETLESFRSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQSDSQFIIMLERGNTEQRDQLFDIIRSEYSMTDTATNRDPDGYTLKAYTIEEMDSYFVDSTGASVTADSSVSLIHRYCEKLPGDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNKNSHLSKQLVCLEACKKLHQMGALDDHLLPYVEEPSENDIIVKSKGSAAGAGTTKRKELHGTTQTCALSGTWGDKIDGAIFQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNIEMELYLISKFVRTSVSSCGQVSLDAEQVMKAMRFHELFFNSLFGRLFIGSKSSGVRREFLLNTQQKSLWSSSNMYLLLPIESSNIPSDESWRINWPGINSCASVVEFLEKRSQLSTGNMNDDTGNPSPCSTGLVETECKSISTVHLANNSVHVNNLKNMVVLAIHTGRIYSILDVVIDTSAESPFDGSADVNSSNYTTFAEYFNNKYGIVLMYPGQPLLLLKQSHNAHNLLVNFNDEGGEALQTGQKMLNEKAQTHVHMPPELLVSIEVPITVLKSSYLLPSLIHRLESLMLASQLREEIAFTTGSQISSSLILEAITTLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDTKIVVGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEPSLVDEAIATASLRTYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRELNELCDSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRNKKAAKGQAAAQLLKNLEKRGISYSRSNSKRRKQGADLVGVSSSLNMGGDACGQSNNEDSSELIKFHKKQKTTGMQLCTRTSIANNCLENACKPKLDTPVIKSINMKKGGPRSSLYELCKRLQWPMPSFESKEQRSRFPIIFGEGSERREGFNSFISSISLHIPNCGVMECRGDHRADKKSSLDSAALVMLHELQRRGKLIIHD* 1689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1758027 1786430 + Vvi4g179 Vvi4g179 784958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g179 1688 SUPERFAMILY dsRNA-binding domain-like 1434 1503 - -
Vvi4g179 1688 ProSiteProfiles PAZ domain profile. 916 1029 IPR003100 GO:0005515
Vvi4g179 1688 CDD SF2_C_dicer 402 534 - -
Vvi4g179 1688 Gene3D - 394 558 IPR027417 -
Vvi4g179 1688 MobiDBLite consensus disorder prediction 1 43 - -
Vvi4g179 1688 Pfam Ribonuclease III domain 1302 1410 IPR000999 GO:0004525|GO:0006396
Vvi4g179 1688 Pfam Ribonuclease III domain 1090 1224 IPR000999 GO:0004525|GO:0006396
Vvi4g179 1688 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1479 1503 IPR014720 -
Vvi4g179 1688 Gene3D Ribonuclease III domain 1054 1236 IPR036389 GO:0004525|GO:0006396
Vvi4g179 1688 Gene3D Ribonuclease III domain 1257 1431 IPR036389 GO:0004525|GO:0006396
Vvi4g179 1688 Pfam Helicase conserved C-terminal domain 420 523 IPR001650 -
Vvi4g179 1688 Gene3D paz domain 901 1026 - -
Vvi4g179 1688 PANTHER DICER-RELATED 37 1684 - -
Vvi4g179 1688 CDD RIBOc 1072 1243 IPR000999 GO:0004525|GO:0006396
Vvi4g179 1688 SUPERFAMILY RNase III domain-like 1265 1431 IPR036389 GO:0004525|GO:0006396
Vvi4g179 1688 SMART helicmild6 436 526 IPR001650 -
Vvi4g179 1688 Gene3D - 40 286 IPR027417 -
Vvi4g179 1688 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 236 IPR014001 -
Vvi4g179 1688 Pfam PAZ domain 915 1049 IPR003100 GO:0005515
Vvi4g179 1688 SMART PAZ_2_a_3 888 1053 IPR003100 GO:0005515
Vvi4g179 1688 Pfam Dicer dimerisation domain 594 679 - -
Vvi4g179 1688 Gene3D Dicer dimerisation domain 589 687 IPR038248 -
Vvi4g179 1688 CDD DEXHc_dicer 47 250 - -
Vvi4g179 1688 SUPERFAMILY PAZ domain 914 1026 IPR036085 GO:0005515
Vvi4g179 1688 ProSiteProfiles Ribonuclease III family domain profile. 1054 1225 IPR000999 GO:0004525|GO:0006396
Vvi4g179 1688 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 594 684 IPR005034 GO:0016891
Vvi4g179 1688 Gene3D - 1437 1504 - -
Vvi4g179 1688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 541 IPR027417 -
Vvi4g179 1688 Gene3D - 1601 1680 - -
Vvi4g179 1688 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 412 564 IPR001650 -
Vvi4g179 1688 SMART riboneu5 1072 1245 IPR000999 GO:0004525|GO:0006396
Vvi4g179 1688 SMART riboneu5 1281 1434 IPR000999 GO:0004525|GO:0006396
Vvi4g179 1688 ProSiteProfiles Ribonuclease III family domain profile. 1266 1411 IPR000999 GO:0004525|GO:0006396
Vvi4g179 1688 Pfam Type III restriction enzyme, res subunit 45 218 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vvi4g179 1688 CDD RIBOc 1282 1432 IPR000999 GO:0004525|GO:0006396
Vvi4g179 1688 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 37 1684 - -
Vvi4g179 1688 SMART ultradead3 42 257 IPR014001 -
Vvi4g179 1688 ProSitePatterns Ribonuclease III family signature. 1302 1310 IPR000999 GO:0004525|GO:0006396
Vvi4g179 1688 SUPERFAMILY RNase III domain-like 1066 1243 IPR036389 GO:0004525|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g179 K11592 DICER1, DCR1; endoribonuclease Dicer [EC:3.1.26.-] - vvi:100254311 3283.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006008 1 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 38