Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g18 ATGTTCGGAGCAAAAAACAGTTTTCTGTTTTTTGTTTTTTCTCAGACTGACACAAGCATCACTCACAAAATTCCGGCCAGAATTTGTGACCTCAAGAACCTTACCGTACTTGACGTCTCTAACAATTACATTCCCGGTGAGTTCCCGGATATTCTCAATTGTTCTAAGCTCGAATATCTGCTCTTGTTGCAAAACTACTTCGTGGGTCCAATTCCAGCTGATATTGATCGGCTTTCACGTCTCCGGTATCTAGACCTTACCGCAAACAACTTCTCTGGAGATATTCCCCCAGCAATTGGGCGGCTACGAGAGCTGTTCTACTTGTTTTTGGTTCAAAATGAGTTCAACGGCACCTGGCCAACGGAGATTGAGAGCTTCAACAATCTATCGAGTCTGGAACTCTTGGACCTCTCACTCAACAAATTGGAAGGTACGATCCCGGGAGGCATGCTTACGTTGAAAAATTTGAACTATTTGCATTTATTCATTAATAGATTGTCCGGCCACATTCCTTCATCCATAGAAGCTCTCAACTTGAAACAAATTGATCTTTCCGACAACCATTTGACGGGGTCCATACCAGCGGGTTTCGGGAAGCTACAAAATTTGACGGGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCAGCAAATATAAGCCTCATTCCTACACTGGGAACCTTCAAAGTTTCCGAGAATAAACTAAGCGGGGAATTACCTCAACATTTATGCGCTAGGGGGGCTTTGCTTGGAGTGGTCGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCACGTCCCTCGGAAATTGCACAAGTTTGCTCACCATTCAGCTTTCCAACAATCGTTTTTCAGGCGGGATTCCTTCCGGCATCTGGACATCCCTGGACATGTTTTATGGTCCAATTCCTGCTGAAATCTCTTCCTGGATGAACATCTCTGCAAGCAATAATCTATTTTCAGGAGAAATTCCAGTGGAATTGACTAGTCTTCCATCCATATATATTCTGTGGCTTGATGGGAATCAATTGTCAGGCCAACTTCCTCATGATATATGGGAATATGAAAACAGTTTCTTGAACAATTCCAATCTGTGTGCCAATATTGAAATTCTGAAGAGTTGCTACTCTAAAGCCAGTAACTCTAAATTGTCAACCAATTACCTAGTCATGATTATATCTTTCACCCTAACTGCTTCCCTGGTTATTGTATTTCTTATCTTTTCCATGGTTCAAAAGTATCAAAGGTGGGACCAAGGGAGCAATGTTGAAACATGGAAGATGACATCCTTCCAAAAGTTTGATTTCACTGAATCCAACATATTGTCGAGTTTGGCACAAAATAGTTTAATTGGAAGTGGGGGGTCAGGGAAGGTATATCGTACCATCATTAACCATTCTGGTGAAGTGGTCGCTGTTAAATGGATTTCGAATAATAGGCAACTAGGCCAGAACCTCGAGAAGCAATTCGTAGCAGAAGTCCAAATATTAGCAAGTGATATTATCTTGGACTGGCCGATGAGGTTGCAAATTGCCATTGGAGCTGCTCGAGGCCTATGCTATATGCACCATGATTTCTCTCCCCCAATCATTCATCGAGATGTGAAGTCCAGCAACATCTTATTGGATTCTGAATTTAATACAAAAATTGCAGATTTTGGATTGGCCAAAATGTTAGCAAAGCAAGAAGAAGACCCTGAAACAATGTCTGTGGTTGTAGGCACTTTCGGATATATTGCCCCAGAGTATGCTTATACAAGAAAGGCGAATAAGAAGATCGACGTCTACAGTTTTGGAGTTGTGCTTCTAGAGTTGGCCACTGGAAGAGAAGCCAATAGGGGGAACGAGCATATGAACCTTGCTCAATGGGCATGGCAGCACTTTGGAGAGGGAAAATCCATTGTGGAAGCACTGGATGAGGAGATCATGGAAGAATGCTTCATGGAAGAAATGATCACTGTCTTCAAACTAGGCCTCATGTGTACTAGCAAAGCACCTTCTGACAGGCCTTCCATGAGGGAGGAGCACTTTCATTTGGTATTTCTTGTTTTTCTTCTTTTCACATTGCTGAGTTTAAGCATATTCTGCTGGGTTTTGTTATCATATTCGCTCTACTCTGTTCGCACTCTGGTTCCTATGTTTTCTCTCTCAAATGGCTCAGAATATGGTTTACCTTTTTCTTCTTTTTGA 2193 42.27 MFGAKNSFLFFVFSQTDTSITHKIPARICDLKNLTVLDVSNNYIPGEFPDILNCSKLEYLLLLQNYFVGPIPADIDRLSRLRYLDLTANNFSGDIPPAIGRLRELFYLFLVQNEFNGTWPTEIESFNNLSSLELLDLSLNKLEGTIPGGMLTLKNLNYLHLFINRLSGHIPSSIEALNLKQIDLSDNHLTGSIPAGFGKLQNLTGLNLFWNQLSGEIPANISLIPTLGTFKVSENKLSGELPQHLCARGALLGVVASNNNLSGEVPTSLGNCTSLLTIQLSNNRFSGGIPSGIWTSLDMFYGPIPAEISSWMNISASNNLFSGEIPVELTSLPSIYILWLDGNQLSGQLPHDIWEYENSFLNNSNLCANIEILKSCYSKASNSKLSTNYLVMIISFTLTASLVIVFLIFSMVQKYQRWDQGSNVETWKMTSFQKFDFTESNILSSLAQNSLIGSGGSGKVYRTIINHSGEVVAVKWISNNRQLGQNLEKQFVAEVQILASDIILDWPMRLQIAIGAARGLCYMHHDFSPPIIHRDVKSSNILLDSEFNTKIADFGLAKMLAKQEEDPETMSVVVGTFGYIAPEYAYTRKANKKIDVYSFGVVLLELATGREANRGNEHMNLAQWAWQHFGEGKSIVEALDEEIMEECFMEEMITVFKLGLMCTSKAPSDRPSMREEHFHLVFLVFLLFTLLSLSIFCWVLLSYSLYSVRTLVPMFSLSNGSEYGLPFSSF* 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 202216 211948 + Vvi4g18 Vvi4g18 784797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g18 730 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 354 499 - -
Vvi4g18 730 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 300 355 - -
Vvi4g18 730 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 501 675 - -
Vvi4g18 730 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 124 300 - -
Vvi4g18 730 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 124 - -
Vvi4g18 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Vvi4g18 730 SMART LRR_typ_2 332 356 IPR003591 -
Vvi4g18 730 SMART LRR_typ_2 200 224 IPR003591 -
Vvi4g18 730 SMART LRR_typ_2 129 153 IPR003591 -
Vvi4g18 730 SMART LRR_typ_2 31 54 IPR003591 -
Vvi4g18 730 SMART LRR_typ_2 78 102 IPR003591 -
Vvi4g18 730 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 300 355 - -
Vvi4g18 730 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 124 300 - -
Vvi4g18 730 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 501 675 - -
Vvi4g18 730 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 16 124 - -
Vvi4g18 730 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 354 499 - -
Vvi4g18 730 SUPERFAMILY Protein kinase-like (PK-like) 448 699 IPR011009 -
Vvi4g18 730 Gene3D Phosphorylase Kinase; domain 1 419 497 - -
Vvi4g18 730 SUPERFAMILY L domain-like 19 350 - -
Vvi4g18 730 Gene3D Ribonuclease Inhibitor 126 397 IPR032675 -
Vvi4g18 730 Gene3D Transferase(Phosphotransferase) domain 1 498 680 - -
Vvi4g18 730 Gene3D Ribonuclease Inhibitor 12 73 IPR032675 -
Vvi4g18 730 Gene3D Ribonuclease Inhibitor 74 125 IPR032675 -
Vvi4g18 730 ProSitePatterns Protein kinases ATP-binding region signature. 452 475 IPR017441 GO:0005524
Vvi4g18 730 SMART serkin_6 446 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g18 730 ProSiteProfiles Protein kinase domain profile. 398 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g18 730 Pfam Protein kinase domain 514 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g18 Vvi11g267 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76607 PF00069 Pkinase 4.50E-27 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g18 - K00924 vvi:100252254 698.353